PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1528
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 432aa    MW: 48863.8 Da    PI: 5.3252
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1528genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.9e-19203300398
                  EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  k+l++sdv+++gr+vlpk+ ae +   +  +e+++++l+d  s +sW++k+++  ++ks++yvl+ ++ +Fvk+ngL  gDf++++  ++++++l+++
  Gh_D05G1528 203 KELKNSDVGSLGRIVLPKREAELNlpTLCDKEGIQVVLKDvYSHQSWTLKYKFwsNNKSRMYVLE-NTADFVKQNGLGIGDFLILY--EDEGKNLYFS 297
                  899******************99999444457899*****7777*******99888888889999.********************..6699999999 PP

                  EE- CS
           B3  96 vfr 98 
                  v++
  Gh_D05G1528 298 VIK 300
                  876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-24198303IPR015300DNA-binding pseudobarrel domain
CDDcd100172.29E-22200300No hitNo description
SuperFamilySSF1019363.01E-20201299IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.405201302IPR003340B3 DNA binding domain
SMARTSM010194.7E-19201302IPR003340B3 DNA binding domain
PfamPF023622.6E-15203300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MENSYMPFLP TTSTATNTIL RQPNMGCSQN SEFSIYEPMN SKTFSSKPIT TAPNSQFHRP  60
TQFMAPYQSL QLPYRHPIEQ TDHSLAYPFF QGQNGIEFGS IIASNGAQHG SCFMQTDGIS  120
MAEERRMLDP YGSKAARIKR KLARQRSLSL QRNASSGATA QVDKRRLNSS GADNDVNINN  180
DTKRDLYMFC TPDNKRLRVL LRKELKNSDV GSLGRIVLPK REAELNLPTL CDKEGIQVVL  240
KDVYSHQSWT LKYKFWSNNK SRMYVLENTA DFVKQNGLGI GDFLILYEDE GKNLYFSVIK  300
VERVAAAEPS NNQPYDSQNI YTDMPFTGPL RDEEETCLEL LIEQLKHTEH EESNDLMTLA  360
MDATYSHGPP AADESQHFVS DANVEITATE LQTSSTSLRG KARSVDEIQI NFDDCYSGLD  420
MLPDVNLYNF LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A1e-531912983110B3 domain-containing transcription factor LEC2
6j9c_D1e-531912983110B3 domain-containing transcription factor LEC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016688036.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
TrEMBLA0A1U8JCJ40.0A0A1U8JCJ4_GOSHI; B3 domain-containing transcription factor LEC2-like
STRINGGorai.009G168500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92622336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.13e-59B3 family protein