PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1326
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 388aa    MW: 42509.8 Da    PI: 9.9665
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1326genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.83.8e-1581168186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W+++ + +Li+a  e+  +l+rg+lk+++W+ev++ + +++ ++++pk   qCk++++ ++k+yk +k+    +  +  s++++fd+l+
  Gh_D05G1326  81 CWSEDATGVLIDAWGERYLELSRGNLKQKHWKEVADIVsSREDYRKTPKtdiQCKNRIDTVKKKYKLEKAKIAAG--GGPSKWVFFDKLD 168
                  7*************************************856666666644449*****************99997..67778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-2579170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEEDEEIPSQ PSNAAAGSPS PSPSSLSPSS NGRITVTVAA APPSEPPPPE ESQLHEKTIV  60
LALPPPQQTK NSGGGGGRED CWSEDATGVL IDAWGERYLE LSRGNLKQKH WKEVADIVSS  120
REDYRKTPKT DIQCKNRIDT VKKKYKLEKA KIAAGGGPSK WVFFDKLDQL IGPTAKTAIN  180
VATAADGGSG GSTGLLSKVP MGIPVGIRSS LNPLRVSQLH EKQQQQQQKQ PRMVALKDQN  240
KMQIRKRAQM DTDSEEEEAD SMDSLPPPMT GKRARRVVDK GVSSGGKGRK WGNSVRDLTQ  300
AILRFGEAYE QAETAKLQQV VEMEKQRMKL AKELELQRMQ FFMKTQLEIS QLKHGRRSGG  360
IGNSSNHHTK INNSNNNNDN NNISGNSN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.102490.0ovule| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153210.0JX615321.1 Gossypium hirsutum clone NBRI_GE59245 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443710.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG81e-115ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0D2ULZ00.0A0A0D2ULZ0_GOSRA; Uncharacterized protein
STRINGGorai.009G144800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-56sequence-specific DNA binding transcription factors