PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G0878

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 387aa MW: 42808 Da PI: 8.7122

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G0878	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.9e-05	149	172	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F +++L++H+ t H Gh_D05G0878 149 FPCTACGEIFQKSHLLEQHQATkH 172 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.847	149	177	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	151	172	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	4.8E-13	174	386	No hit	No description
Gene3D	G3DSA:3.90.228.10	9.4E-6	321	386	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MAKANIGSFF NKFLSLFVLL LHLGCFVFTA AKDNHKATKK RKSSPLSPNS HKHRKALSST 60 WTFLKRIFSS KANCINTIQA AHPPTSATTP ALTFARNSQH SLVSMSMINP PETHLSDSPP 120 PRSQIQSGYC PESGISSDYP FFPLRNDIFP CTACGEIFQK SHLLEQHQAT KHAVSELVDG 180 DSGNNIVRII FKTGWTDKVK SPEIHRILKI HNSPKILTKF EEYREVVKAK AARNGAMGRR 240 DERCIADGNE LLRFNCSTFT CDLGLNGSSS ICNQQYCSIC GIIKSGFSPK MDGISTLSTS 300 WRAHMAIPED VEEEFKFMNV KRAMLVCRVV AGRVGSEGEE IDKEDGGFDS VIGRGGGSGA 360 YTKFDEEELL VFNPRAVLPC FVIVYTV

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MAKANIGSFF NKFLSLFVLL LHLGCFVFTA AKDNHKATKK RKSSPLSPNS HKHRKALSST  60
WTFLKRIFSS KANCINTIQA AHPPTSATTP ALTFARNSQH SLVSMSMINP PETHLSDSPP  120
PRSQIQSGYC PESGISSDYP FFPLRNDIFP CTACGEIFQK SHLLEQHQAT KHAVSELVDG  180
DSGNNIVRII FKTGWTDKVK SPEIHRILKI HNSPKILTKF EEYREVVKAK AARNGAMGRR  240
DERCIADGNE LLRFNCSTFT CDLGLNGSSS ICNQQYCSIC GIIKSGFSPK MDGISTLSTS  300
WRAHMAIPED VEEEFKFMNV KRAMLVCRVV AGRVGSEGEE IDKEDGGFDS VIGRGGGSGA  360
YTKFDEEELL VFNPRAVLPC FVIVYTV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9426	0.0	boll\| ovule\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016689138.1	0.0	PREDICTED: uncharacterized protein LOC107906611
Refseq	XP_016689139.1	0.0	PREDICTED: uncharacterized protein LOC107906611
Refseq	XP_016689140.1	0.0	PREDICTED: uncharacterized protein LOC107906611
TrEMBL	A0A1U8JKD8	0.0	A0A1U8JKD8_GOSHI; uncharacterized protein LOC107906611
STRING	Gorai.009G092800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7919	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-114	C2H2 family protein