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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gh_D05G0849 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
C2H2 |
| Protein Properties |
Length: 311aa MW: 33218.3 Da PI: 4.5779 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D05G0849 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.2 | 3.1e-05 | 285 | 308 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23
++C+ C+ksF + L++H + H
Gh_D05G0849 285 FSCGSCNKSFGSEGGLESHKKAkH 308
89*****************99877 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MNLLIYSYLV WTNKFNHLVI LLLGIEVKSG QPIKADPGAN YVIHLSQASL GESKNKAESV 60
PLYVNVDGKK LILGTLSHQS CPQLSFDLVF DEEFELSHNW KNGSVYFLGM SSEEESEEEE 120
DEELPVAAAA AAAAVNGKAK PDAKTAKANA GKPDAVKQSG KIAEPSNNRK SEDEDDDDES 180
EDESGSDEED DSDDDDESDE MSMDESSDDE DEETPKKVES SKKIPVESSK KRPAEAATPA 240
SAKKAKSAVT PQKTDGKKGG HTATPHPAKQ SGKNSAKSPK SGGQFSCGSC NKSFGSEGGL 300
ESHKKAKHGG K
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during fertilization, while it is repressed during seed development. {ECO:0000269|PubMed:15082924}. |
| Uniprot | TISSUE SPECIFICITY: Predominantly expressed in ovaries. Accumulates predominantly in the micropylar region of the ovule's integument. {ECO:0000269|PubMed:15082924}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ527448 | 9e-99 | HQ527448.1 Gossypium herbaceum clone NBRI_B_2368 simple sequence repeat marker, mRNA sequence. |
