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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G0814 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YB | ||||||||
Protein Properties | Length: 167aa MW: 19108.1 Da PI: 4.9027 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 46.9 | 6.8e-15 | 8 | 103 | 5 | 95 |
NF-YB 5 drflPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 ++lP a v r++k+ l + + + kda e + fi ++++ a+d c++ kr+t+n++d++ al ++ f ++v+pl + l+++r+ ++ Gh_D05G0814 8 AEELPKAIVRRVVKEKLSEcspdyDFNVHKDAHLAFTESARIFIHYLSATANDICKESKRQTMNAEDVFKALEEIEFSEFVKPLGASLAEFRKKNA 103 5689**********9997622222458*****************************************************************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.9E-30 | 5 | 162 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.9E-10 | 10 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 3.43E-22 | 11 | 109 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MEKVVSEAEE LPKAIVRRVV KEKLSECSPD YDFNVHKDAH LAFTESARIF IHYLSATAND 60 ICKESKRQTM NAEDVFKALE EIEFSEFVKP LGASLAEFRK KNAGKKGGAA KENEVKKKRK 120 IEYSSAKNGT KTKQKKEDNH KEEEQVEGEQ EQDEEEDNEE EENHGSE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 119 | RKKNAGKKGGAAKENEVKKKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.19734 | 0.0 | boll| ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016689251.1 | 1e-117 | PREDICTED: DNA polymerase epsilon subunit 3-like | ||||
TrEMBL | A0A1U8JG85 | 1e-115 | A0A1U8JG85_GOSHI; DNA polymerase epsilon subunit 3-like | ||||
STRING | Gorai.009G085200.1 | 1e-115 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12007 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 8e-47 | nuclear factor Y, subunit B11 |