PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0760
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 263aa    MW: 29161.3 Da    PI: 8.4681
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0760genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof128.32.3e-403596263
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                 +e+alkcprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  Gh_D05G0760 35 HEQALKCPRCDSINTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 96
                 7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-292391IPR003851Zinc finger, Dof-type
PfamPF027012.7E-343793IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4693993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDPSTRQHQE MANPSMENMS VNSKGQQARK PRPQHEQALK CPRCDSINTK FCYYNNYSLS  60
QPRYFCKSCR RYWTKGGTLR NVPVGGGCRK NKRSSSSSSS SSSSKRSQDQ PLLTSNTNPL  120
IAGHLPPLNY DTNDLSLAFA RLQKQSGFPL GFDDFGNPSL NGCTSSTSPP NPAIVDALRS  180
SFLGNQNSLQ NFYYGFGNEN MGEVEDMGFN GELMVPYHNE EMSNASTVTT MKQELSIADF  240
DSGRGTWNGF NSSWHGLLNS PLM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.126090.0boll| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3515470.0AF351547.1 Gossypium hirsutum clone JESPR310 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445564.10.0PREDICTED: dof zinc finger protein DOF3.1-like
TrEMBLA0A0D2TFV40.0A0A0D2TFV4_GOSRA; Uncharacterized protein
STRINGGorai.009G079400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69602743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.12e-39Dof family protein