PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0749
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 291aa    MW: 33057.3 Da    PI: 8.706
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0749genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000683254123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C +Cgk F ++     H+r H
  Gh_D05G0749 32 FFCRYCGKGFMSNKAVAGHLRIH 54
                 67*******************98 PP
2zf-C2H213.10.0002881103123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C  C++sFs+  +L +H + H
  Gh_D05G0749  81 FSCLVCTESFSSMKLLCQHTNIH 103
                  89******************997 PP
3zf-C2H212.80.00037216236121
                  EEETTTTEEESSHHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                  ++C++Cgk+F +   L  H  
  Gh_D05G0749 216 HQCEICGKTFETGQALGGHKT 236
                  79********99888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.84E-53059No hitNo description
PROSITE profilePS5015712.3213259IPR007087Zinc finger, C2H2
SMARTSM003550.063254IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803456IPR007087Zinc finger, C2H2
SuperFamilySSF576674.84E-780103No hitNo description
SMARTSM003550.9281103IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.99581108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083105IPR007087Zinc finger, C2H2
SuperFamilySSF576674.84E-7211238No hitNo description
PfamPF139122.2E-9216239IPR007087Zinc finger, C2H2
SMARTSM003550.1216238IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637216243IPR007087Zinc finger, C2H2
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MVPADSCSLP FLGGKYLKTQ DAETPHDSRN SFFCRYCGKG FMSNKAVAGH LRIHSHHHPT  60
SKTELQQQQQ DDDDDDDDDF FSCLVCTESF SSMKLLCQHT NIHRHMDSSQ ESNISSSGAD  120
TIVKQGNGPH TINLLKDFNF KWSRTGKRGS NRITSQDAQP LKLRVRPPHM ETRKNKKMKT  180
EDTKMEFELG GTKSESGVDP CHARRSRKNK AVKSEHQCEI CGKTFETGQA LGGHKTYHRV  240
KKNKVELLQQ GKTKQEPCMM TPMLLPHLSQ QPDLSHPKTM LDFDLNIPYQ Q
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3949241e-137GQ394924.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1947 SSR marker DPL0266 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016684398.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1U8J7030.0A0A1U8J703_GOSHI; zinc finger protein ZAT9-like
STRINGGorai.009G078100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1835248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.15e-08C2H2 family protein