PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0524
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 698aa    MW: 76276.6 Da    PI: 5.8652
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0524genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.95.5e-29205258155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr++W+ eLH++Fv+av+qL G ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Gh_D05G0524 205 KPRVVWSVELHRKFVSAVNQL-GLEKAVPKKILDLMNVDGLTRENVASHLQKYRL 258
                  79*******************.********************************8 PP
2Response_reg839.4e-28261341109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +++l+++l+k +y +v+++ ++  al++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++ +++ + +  Ga 
   Gh_D05G0524  26 VLAVDDDPVCLKVLENLLRKCQY-HVTTTNQAITALKMLRENRnrYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTKLVMKGITHGAC 120
                   799********************.***************999889*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
   Gh_D05G0524 121 DYLLKPVRIEELKN 134
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.1E-1701630IPR017053Response regulator B-type, plant
SuperFamilySSF521721.05E-3523146IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.1E-4223166No hitNo description
SMARTSM004484.1E-3324136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.79925140IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.7E-2526134IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.05E-2827139No hitNo description
PROSITE profilePS5129412.392202261IPR017930Myb domain
SuperFamilySSF466898.6E-20202262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-30203263IPR009057Homeodomain-like
TIGRFAMsTIGR015579.0E-25205258IPR006447Myb domain, plants
PfamPF002491.3E-7207257IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MTLQEKRGGS NGEDGGKDRF PIGMHVLAVD DDPVCLKVLE NLLRKCQYHV TTTNQAITAL  60
KMLRENRNRY DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSDTKL VMKGITHGAC  120
DYLLKPVRIE ELKNIWQHVV RKKKPDSKDQ INASNQDKSR GGTGETGPTS SSSDQKVSKK  180
RKDQSEDEDE EGDDNGHEDP STQKKPRVVW SVELHRKFVS AVNQLGLEKA VPKKILDLMN  240
VDGLTRENVA SHLQKYRLYL KRLSSVATQQ ANMVAALGSK DPSYLRMGSL DGFGDFRTLT  300
GPGRISSASL SSYQPGGLFG RLNSSAALSL RGISSGVIQS GHSQTLNNPI NGFGKIQPAV  360
VPANQNQNGT LFQGIPTSIN QLSQNKPTNH FGEFNRGNDP NAFGVATNFQ DARVTVGGSS  420
NTLPVSSGNP LLLQSNTQQT QHSGGAFGNQ PSSLGVTSLN QEPFDMNVRG SSNFLDHGRC  480
SENWQSAVQL SSFPSNALSA SETFSHEQLP SNNLQESISW TSSHLSSSPL DLSSSMANPA  540
NLEDSRGNIS QVGLNNNVIQ NIDYTTKQQW GDSRHDYNGN MNNSFSRGDS LVPASGPMMD  600
QSNLISDKMN DVSLFSQFSG DSTYVVPHLD GEKSAFDTKS RSNDDFLFET KPQNGFNQNS  660
FEPLENIMMS MIKSDQNNET PLMDGEFGFD AYSLGSCI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-26201264164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016689557.10.0PREDICTED: two-component response regulator ORR24-like
SwissprotQ6K8X61e-140ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A1U8JGT90.0A0A1U8JGT9_GOSHI; two-component response regulator ORR24-like
STRINGGorai.009G054200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-122response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]