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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G0481 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 355aa MW: 39122.4 Da PI: 6.6888 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.1 | 1e-17 | 248 | 282 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Gh_D05G0481 248 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 282 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.1E-77 | 10 | 338 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 12.519 | 242 | 278 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.2E-17 | 242 | 292 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.5E-14 | 243 | 279 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 2.14E-15 | 244 | 306 | No hit | No description |
CDD | cd00202 | 2.05E-14 | 247 | 294 | No hit | No description |
Pfam | PF00320 | 1.3E-15 | 248 | 282 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 248 | 273 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MEAPAFVPGT TCCSQFTPDK PDHFIVEDLL DFSNDDTILT DQTFDSFSAA VHSTDSSSVT 60 PFDTCNSSSF SASQPNLVAG IASRAFNDGH SSADLYVPCD DLAELEWLSN FVDESFSSDD 120 LQKHQLISGI KIRPDESSET GGFQSVLPNQ INDAIDNGDN NHSNNTNNPI FHPDMSVPAK 180 ARSKRSRAAP CNWASRLLVL SPTTSSSEPD IVVPVQPPPP NHPGKKPVKT ISSKKKEGGV 240 ANSDGRKCLH CATDKTPQWR TGPMGPKTLC NACGVRYKSG RLVPEYRPAA SPTFVLTKHS 300 NSHRKVLELR RQKEMLRAQQ HHQQPFMHHH HQNMVFDVSN GDDYLIHQHV GPDFR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016689614.1 | 0.0 | PREDICTED: GATA transcription factor 12 | ||||
Swissprot | P69781 | 4e-92 | GAT12_ARATH; GATA transcription factor 12 | ||||
TrEMBL | A0A2P5R624 | 0.0 | A0A2P5R624_GOSBA; GATA transcription factor | ||||
STRING | Gorai.009G049300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6625 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 1e-79 | GATA transcription factor 12 |
Publications ? help Back to Top | |||
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