PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0299
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 297aa    MW: 33149 Da    PI: 8.6521
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0299genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.2e-19170203134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Gh_D05G0299 170 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 203
                  *******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-17164226IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.519164200IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-12164202No hitNo description
Gene3DG3DSA:3.30.50.102.4E-15168203IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.44E-13169201No hitNo description
PfamPF003208.3E-17170203IPR000679Zinc finger, GATA-type
PROSITE patternPS003440170195IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MTSSNCYSSL YPFPIDLNED DQHQHHQLFN LISQPSSSSS SSSSSSSPST SLTCPFSFSP  60
TVQHQQAAFY QSLPQQFHDD QQDQEKIHVP QDGPLRSDCE LRLSIWKKEE RVETHHQSHD  120
SAKWMPSKMR MMSSDHTNLS NSPTPKSEDH QEQKQPSSSP DNNNSTIRVC ADCNTTKTPL  180
WRSGPRGPKS LCNACGIRQR KARRGAAAAG IVVAAETPPS MKSEVQLKAK RSSNEGFPHL  240
KNKKCKLNSQ SQSRKKLCFE DLRIILSKNS AFHGVFPQDE KEAAILLMAL SYGLVHG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270200.0HQ527020.1 Gossypium herbaceum clone NBRI_C2_559 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016689881.10.0PREDICTED: GATA transcription factor 21-like
TrEMBLA0A1U8JHY50.0A0A1U8JHY5_GOSHI; GATA transcription factor 21-like
STRINGGorai.009G031400.11e-179(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21092675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.13e-39cytokinin-responsive gata factor 1