PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G0276

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 367aa MW: 41157.1 Da PI: 7.4234

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G0276	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	136	156	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +f++ G C+ G+ C FaHg Gh_D05G0276 136 ACTDFRK-GNCRKGEACEFAHG 156 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	5.2E-5	131	157	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.028	132	158	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.0E-5	135	158	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-5	136	156	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	14	166	189	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.643	166	190	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MMLGETHRFN PTVHVPPWPN LDDDQTAEVH SPLNYNAPCN HFNNNSNPPF YLQEALGMLR 60 RYLPSNELDI ESDSELSFHP DSPVDACSCD HFRMYEFKVR RCGRGRAHDW TDCPYAHPGE 120 KARRRDPRKY HYSGTACTDF RKGNCRKGEA CEFAHGVFEC WLHPARYRTQ PCKDGTSCRR 180 RVCFFAHTPE QLRVVSSVDS YDGSPSSAKT LSFSGSPPMS PRAEPSPPIS PMAQSLNRSL 240 ASASINEAVA SMRNLQLGKV KSLPSSWNVQ VGCCSPAFGS PRGAVIRPSF CSLPSTPTQN 300 LTRPAIGHLD FWDEACEEEP QMERVESGRD LRAKMFEKLC KENSLERVNP TQSSGGPNVD 360 WVSDLVK

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MMLGETHRFN PTVHVPPWPN LDDDQTAEVH SPLNYNAPCN HFNNNSNPPF YLQEALGMLR  60
RYLPSNELDI ESDSELSFHP DSPVDACSCD HFRMYEFKVR RCGRGRAHDW TDCPYAHPGE  120
KARRRDPRKY HYSGTACTDF RKGNCRKGEA CEFAHGVFEC WLHPARYRTQ PCKDGTSCRR  180
RVCFFAHTPE QLRVVSSVDS YDGSPSSAKT LSFSGSPPMS PRAEPSPPIS PMAQSLNRSL  240
ASASINEAVA SMRNLQLGKV KSLPSSWNVQ VGCCSPAFGS PRGAVIRPSF CSLPSTPTQN  300
LTRPAIGHLD FWDEACEEEP QMERVESGRD LRAKMFEKLC KENSLERVNP TQSSGGPNVD  360
WVSDLVK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.5832	0.0	boll\| root\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016689907.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 20-like
Swissprot	Q9M0G2	1e-141	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A1U8JHX5	0.0	A0A1U8JHX5_GOSHI; zinc finger CCCH domain-containing protein 20-like
STRING	Gorai.009G029300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1249	27	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29190.1	1e-133	C3H family protein

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]