PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G0270

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 423aa MW: 47689.1 Da PI: 8.2931

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G0270	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	70.3	5.3e-22	64	146	55	128
NAM 55 ekewyfFskrdkkyatgkrknratk........sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +fF++ +k+y+tg+rk+r+++ + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Gh_D05G0270 64 GLSKHFFHRPSKAYTTGTRKRRKIQtecdlqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 146 4467****************73334555544778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	19.65	7	165	IPR003441	NAC domain
Pfam	PF02365	3.0E-8	58	146	IPR003441	NAC domain
SuperFamily	SSF101941	8.76E-24	62	165	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MNKSNLMSSI TSSHLIDAKL EEHQLCGSKH CPGCGTKLEX LKEKMGFVIP IPRNSQFPGV 60 TRDGLSKHFF HRPSKAYTTG TRKRRKIQTE CDLQGGETRW HKTGKTRPVM VNGKQKGCKK 120 ILVLYTNFGK NRKPEKTNWV MHQYHLGQHE EEKEGELVVS KIFYQTQPRQ CNWSDRTNAA 180 TTVDGTTNVV IVDPNNIRRD SGIRSCSSKE QLIPLRDEVS GAGIAAAALS SFASAMDIQH 240 LKSDHHLSFT PFSKSFDQVG LAEASAARET PTQGTGQEIP EHHRGPNHMA HDHHHHHHLL 300 LHHHQQQQQQ QHQIATTAFH ISRPSHPSST IISPPPLHHT SIILDEDSFH VSRIMLQNES 360 FQQQQEQQSH KLGGRSATGL EELIMGCTST DIKEESSITN PQEAEWLKYS SFWPDPDNHA 420 HHG

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MNKSNLMSSI TSSHLIDAKL EEHQLCGSKH CPGCGTKLEX LKEKMGFVIP IPRNSQFPGV  60
TRDGLSKHFF HRPSKAYTTG TRKRRKIQTE CDLQGGETRW HKTGKTRPVM VNGKQKGCKK  120
ILVLYTNFGK NRKPEKTNWV MHQYHLGQHE EEKEGELVVS KIFYQTQPRQ CNWSDRTNAA  180
TTVDGTTNVV IVDPNNIRRD SGIRSCSSKE QLIPLRDEVS GAGIAAAALS SFASAMDIQH  240
LKSDHHLSFT PFSKSFDQVG LAEASAARET PTQGTGQEIP EHHRGPNHMA HDHHHHHHLL  300
LHHHQQQQQQ QHQIATTAFH ISRPSHPSST IISPPPLHHT SIILDEDSFH VSRIMLQNES  360
FQQQQEQQSH KLGGRSATGL EELIMGCTST DIKEESSITN PQEAEWLKYS SFWPDPDNHA  420
HHG

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269\|PubMed:25265867}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847200	0.0	KC847200.1 Gossypium hirsutum NAC domain protein NAC23 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016689911.1	0.0	PREDICTED: uncharacterized protein LOC107907169
Swissprot	Q9M0F8	1e-132	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1U8JI14	0.0	A0A1U8JI14_GOSHI; uncharacterized protein LOC107907169
STRING	Gorai.009G028900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6635	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-113	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]