PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0240
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 531aa    MW: 57259.9 Da    PI: 8.2451
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0240genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR40.84.3e-1368106241
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                  ++k+ nCk+s+Clk+YCeCfa+g +C+e C+C +C N+ e
  Gh_D05G0240  68 KQKHSNCKHSRCLKLYCECFASGMYCDE-CNCVNCYNNVE 106
                  78999**********************9.********976 PP
2TCR41.92e-13151187137
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCk 37 
                  k++kgC+Ck+s Cl+kYCeCf+a+  C e+CkC +Ck
  Gh_D05G0240 151 KHSKGCHCKRSGCLRKYCECFQANILCYESCKCMGCK 187
                  589*********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.0E-1467107IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163431.0768191IPR005172CRC domain
PfamPF036384.6E-1070104IPR005172CRC domain
SMARTSM011142.8E-12151190IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.7E-10154187IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MDVASWSPAA ASVNQQQQPQ INQQVAATIS VAAGQSHPLT TASSSIVKPE SLKAKTRPNE  60
LNDGAPKKQK HSNCKHSRCL KLYCECFASG MYCDECNCVN CYNNVEYEAV RRDSVGATLK  120
SNLNAFRPKI NSSSHGAKDN KEAGEVLMLG KHSKGCHCKR SGCLRKYCEC FQANILCYES  180
CKCMGCKKFK GSEERRTLFH GDYANNMAYI QQAANATTTG AIGSSGYASA PVSKKRKSQE  240
FLLGSTAKDP SVHSLGHLQQ TNLVRASIPS SSLSSMSVSC AGTAVGPSKL SYRSLLADII  300
QKQDLKELCS VLVVLSREAA KILADQRSLI EGAEDHLEIS FASSTQDRLE SQKDFIAEKT  360
RADNCSSANQ AVKSGPENSC TDVADMPEGS LMSPGTLALM CDEQDTTFTA AVSQLPCGKG  420
MIEIDAEHER VVLTKFRDCL NRLITFGEIK GMCCSTLARM EIGSQRCPLS HRAETGNQQG  480
FVNYGVPKTF FSPTVRTSKT AAVVTTADND LPTVPPFPGN GDAKSKPAKQ M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-29602002132Protein lin-54 homolog
5fd3_B3e-29602002132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016689960.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-156TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1U8JI480.0A0A1U8JI48_GOSHI; protein tesmin/TSO1-like CXC 5 isoform X1
STRINGGorai.009G025900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17832884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-136Tesmin/TSO1-like CXC domain-containing protein