PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0025
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-PHD
Protein Properties Length: 733aa    MW: 83026.2 Da    PI: 9.7131
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0025genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.39.6e-12503547953
                  HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
     Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                  ++ +e L e+F++n  ps+  re L+k+lgL+ ++V  WF+N R+
  Gh_D05G0025 503 PTAVEKLREVFAENELPSRVVRENLSKELGLEPEKVNKWFKNARY 547
                  678999*************************************97 PP
2PHD39.31.5e-13238293151
                  SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
          PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                  +C+ C+   +  ++++vlCd +C+++fH+kCl+++l++e +p g   w+C+ C++k
  Gh_D05G0025 238 FCAKCELreAFPDNDIVLCDgTCNRAFHQKCLDPPLDTEHIPPGdqGWFCKFCECK 293
                  688898854555********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.09E-14230296IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.1E-12235294IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.549236293IPR019787Zinc finger, PHD-finger
PfamPF006289.2E-11238293IPR019787Zinc finger, PHD-finger
SMARTSM002497.7E-9238291IPR001965Zinc finger, PHD-type
CDDcd155042.45E-32238290No hitNo description
PROSITE patternPS013590239290IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.3E-13483546IPR009057Homeodomain-like
PROSITE profilePS5007112.811492552IPR001356Homeobox domain
SuperFamilySSF466892.4E-11493557IPR009057Homeodomain-like
SMARTSM003895.9E-11494556IPR001356Homeobox domain
CDDcd000861.00E-9495556No hitNo description
PfamPF000463.2E-9503547IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MRGTGKKLTD HGSAKSSSSK REAGSKLIAT LKKFKNRCKI SHGRVRKPKH HVKKVSSTLL  60
KRKVTASVTE GTGNDVSSAR KVGCKTNLHK ANKKGSSKKL GLSKLQGKNA ICASLEENGK  120
KDNADVRIKK LTRKTKKGQK DKVELDEASR LQRRTRYLLI KMKLEQNLID AYSGEGWKGQ  180
SREKIKPEKE LQRAKKQILK CKLGIREAIR QLDSLSSVGS IEGSVIAPDG SVYHEHIFCA  240
KCELREAFPD NDIVLCDGTC NRAFHQKCLD PPLDTEHIPP GDQGWFCKFC ECKMEIIEAM  300
NAHIGTHFSV DSHWQDIFKD EAAFPDDANA SLNPGDEWPS DDSEDDDYDP ERRENSCRIS  360
GTATDGDESD ETDNSTSLSW SVDSEDLSGF GRHENHPFDS GGDSYETSDG EILSGRRRRR  420
AVDYRKLYDE MFGKDAPPYE QVSEDEDWGP GKRKHREKES DAASTLMTLY ESETKFLNIE  480
TTEMKRQLPS DLKSRRPFFR IPPTAVEKLR EVFAENELPS RVVRENLSKE LGLEPEKVNK  540
WFKNARYLAL KSRKVERSDH LQSSSPRVPK EPEVEAPKRK DTEIMALEDM SEAALVRTPK  600
RLKTKLRKSP NSKSVCTSVD RSPHNGLSIV SHTNSDKVSK ELSDDVILKK LLNVKKKWGK  660
EKRVKIIGGG GGLEAFELEM ERLCRAKVRL ENMKQTLLGL ESRKARKLNK RWQRVHEESV  720
IYIPIAELKE KVV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.208960.0boll
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016690205.10.0PREDICTED: pathogenesis-related homeodomain protein-like
SwissprotP487851e-167PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A1U8JIV40.0A0A1U8JIV4_GOSHI; pathogenesis-related homeodomain protein-like
STRINGGorai.009G002500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-166pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]