PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G1754 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 251aa MW: 28133.2 Da PI: 7.0698 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.7 | 4.3e-13 | 9 | 96 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 ffk+lt dv k rlv+pk++ + + g + + +++l+ +g+ Wevk+++rkk+ vl+ GWk+Fv n+Lk+gD ++ + d++ Gh_D04G1754 9 FFKELTDTDVKK--RLVVPKEYQDFFlpsyG---RLPAKIKLMY-DGKIWEVKCTVRKKGYLkPVLSVGWKKFVVVNELKVGDRITMYKDEDGF 96 899997777776..59*****9876697543...4677899887.9********77544433699*********************99444333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.997 | 7 | 107 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.39E-16 | 7 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-16 | 8 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.55E-22 | 8 | 105 | No hit | No description |
SMART | SM01019 | 8.6E-9 | 9 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.4E-10 | 9 | 95 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MAAHSGIIFF KELTDTDVKK RLVVPKEYQD FFLPSYGRLP AKIKLMYDGK IWEVKCTVRK 60 KGYLKPVLSV GWKKFVVVNE LKVGDRITMY KDEDGFSHYM VEVEKPPASN QHGTLPDSPA 120 LSFIHHKPDE TTLKYRKEVP EDLAGAHHQP DIAPMNIPVN AWQWPSIGMF GTNMSNERAD 180 HFSLMTYGSG TSAAGGIGEA CPEIITDHHQ DLSLDLVRRQ PGTIPPPYVG EVKLDLTLAP 240 TQCGESQRIT N |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016679336.1 | 0.0 | PREDICTED: uncharacterized protein LOC107898334 | ||||
TrEMBL | A0A1U8IMJ3 | 0.0 | A0A1U8IMJ3_GOSHI; uncharacterized protein LOC107898334 | ||||
STRING | Gorai.012G168900.1 | 1e-176 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19753 | 2 | 5 |