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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G1742 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 191aa MW: 21514.2 Da PI: 10.2299 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.2 | 1.9e-10 | 9 | 97 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 f k+l ++ ++rl +p k + + g + ++++l+ + W + +++rk++ + v+++GW++Fv n+Lk gD v+++ ++++++ Gh_D04G1742 9 FSKKL--TYTDINKRLAIPTKILPSLpGFNRSHAVKIQLMY-GTKIWPIDCTVRKQGYTkPVFSRGWRKFVVHNKLKIGDRVTIYKVQHQDG 97 56777..5666678899999999999866655666666665.669******8866665579**********************995544443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.1E-13 | 5 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-12 | 6 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.137 | 7 | 109 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.05E-15 | 8 | 107 | No hit | No description |
Pfam | PF02362 | 1.3E-7 | 16 | 97 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MAVQATMMFS KKLTYTDINK RLAIPTKILP SLPGFNRSHA VKIQLMYGTK IWPIDCTVRK 60 QGYTKPVFSR GWRKFVVHNK LKIGDRVTIY KVQHQDGSSH YRVEVEKPAA GTHEVDETTV 120 TRHRREQLPN APMISMLASV PINTLVDDHV IITKPPVCRI FGTNISGEAC CKISTGERLS 180 LDLVLSQPTI C |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243083 | 0.0 | AC243083.1 Gossypioides kirkii clone GKH003A06-jng, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458573.1 | 2e-54 | PREDICTED: uncharacterized protein LOC105779372 | ||||
TrEMBL | A0A0D2V6I7 | 1e-138 | A0A0D2V6I7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G167700.1 | 1e-139 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24837 | 3 | 4 |