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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G1686 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 416aa MW: 47470 Da PI: 6.9639 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 67.7 | 2.4e-21 | 87 | 181 | 1 | 83 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt ++v++Li++ ++++e+ ++++ +k ++W+ vsk+m erg+ +sp+qC++k++nlnk y+++++ +++ +++++++ +++d Gh_D04G1686 87 KWTGKMVKLLITILSYIGEDPSTDCagnqikvssllRKLGKWKCVSKVMLERGYIVSPQQCEDKFNNLNKTYRRLNDLLGRGtSCKVVENPKLLD 181 7**********************988899999999999*******************************************95588887776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.2E-18 | 85 | 209 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MEGKPSAGGN MLQEWEYGCL GLQGSIQPQN EQQPCMSKLP SAFGSVENER REITVIEDDV 60 TNYAKQCMLE HNEAGKNEDG PPWQRMKWTG KMVKLLITIL SYIGEDPSTD CAGNQIKVSS 120 LLRKLGKWKC VSKVMLERGY IVSPQQCEDK FNNLNKTYRR LNDLLGRGTS CKVVENPKLL 180 DIINVSEKGK EDVRKLLMSK HLFFEEMCSY HNGNRMYLPH DPDLLQSLLF ILKNEDDYEL 240 LDSNQPTPDK KAGVTAKDNE DFAEFSAKWL ELISENGIAP SCSNQTLNAQ GDATEYNGAN 300 SGFSAEISTL WFKPMNDNEV VGPTSSLKPS CFNQIPDTED NEADGSQWMT RQAYQLEKRK 360 LRLKSKVFDL EKQRLKWRRR SWKQDMELEK MRLVNKCLKH GNEYIALQLK GKKIGS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016679503.1 | 0.0 | PREDICTED: uncharacterized protein LOC107898530 | ||||
TrEMBL | A0A1U8ISV1 | 0.0 | A0A1U8ISV1_GOSHI; uncharacterized protein LOC107898530 | ||||
STRING | Gorai.012G159500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22149 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-82 | sequence-specific DNA binding transcription factors |