![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D04G1685 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 251aa MW: 29515.1 Da PI: 9.1866 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 57.1 | 4.8e-18 | 1 | 93 | 6 | 86 |
trihelix 6 evlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +v++Li+a+ +++e+ ++++ k ++W+ vsk m ++g+++sp+qC++k+++lnkryk+++ +k+ +++++++ ++d ++ Gh_D04G1685 1 MVKLLINAVCYIDEDASSDCqggvkrklsmsHKIGKWRCVSKLMVKGGYRVSPQQCEDKFNDLNKRYKRLNGVLGKGtSCKVVEKPELLDVMD 93 6999************998777777888888999*******************************************5699999998888876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.5E-14 | 1 | 117 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MVKLLINAVC YIDEDASSDC QGGVKRKLSM SHKIGKWRCV SKLMVKGGYR VSPQQCEDKF 60 NDLNKRYKRL NGVLGKGTSC KVVEKPELLD VMDVSDKVKE EVKKILSSRN LFYEEMCFYH 120 TGNRLYLPQD PKLQCSLQSR QYNGDDEFKK ELHDAEPDDV FCKGNDVSLN GMEYGKSSAY 180 RLQEQWMAFR LLELQKQKLQ IQVQKLELEK KRFKWRRTNW NQDKDLDKMR LENECMKLAN 240 ERLAFELGTR K |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017613026.1 | 1e-168 | PREDICTED: uncharacterized protein LOC108458225 | ||||
TrEMBL | A0A2P5RD96 | 1e-179 | A0A2P5RD96_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G159500.1 | 1e-156 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM28209 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76870.1 | 1e-51 |