PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1600
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 365aa    MW: 42110 Da    PI: 6.5179
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1600genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.54.4e-1723107795
                  .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                   ++ l+ + l++p+kf++++g +   s   tl+ + gr+W v+l  r  ++r++l +GW+ Fv+   ++ g fvvFk++g+s f  +v 
  Gh_D04G1600  23 VASILQDKKLRIPNKFVKKFGDE--LSSVATLTVPGGRQWLVEL--REEDKRIWLDNGWNTFVEYYSICIGYFVVFKYEGNSHFGVHVY 107
                  556677788********999855..7779***************..**********************************999977665 PP
2B361.91e-19271362499
                  E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +l ps+v k  +l lp+ fa+++ +g+      ++l+ ++g++W v++ y++      ++kGW eFv +n+L+egD+++F+l++++e  l+v++fr+
  Gh_D04G1600 271 ILRPSYVYKGVLLHLPRCFARRYlNGVD---GVIMLQIPEGKKWPVQCVYCNDN--LKFSKGWAEFVLDNNLDEGDVCIFELINTKEIVLKVTIFRA 362
                  5789*******************85552...2699999**********776666..679************************999999****9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-2112109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-2216109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-1517108No hitNo description
PROSITE profilePS5086313.43717110IPR003340B3 DNA binding domain
SMARTSM010191.3E-1418112IPR003340B3 DNA binding domain
PfamPF023621.8E-1324107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-25259362IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-25261361IPR015300DNA-binding pseudobarrel domain
CDDcd100175.60E-22266361No hitNo description
SMARTSM010194.7E-18267363IPR003340B3 DNA binding domain
PROSITE profilePS5086314.395268363IPR003340B3 DNA binding domain
PfamPF023623.0E-18271362IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSQPVGPSLP LNNSSCIFYK LIVASILQDK KLRIPNKFVK KFGDELSSVA TLTVPGGRQW  60
LVELREEDKR IWLDNGWNTF VEYYSICIGY FVVFKYEGNS HFGVHVYNLK SSEINYLSNN  120
SREPGDFAEI TGSSSYFLVD KDVDESLDHE KKKYKISTCL HQENELRDLR ATFQSTEDKG  180
IQFNGVELTS IGDEGGPCFS NETLRYTIKQ EVEPSMDEQE PFRKFKVKEE LPTLDSPRVL  240
RRRRDVTTEE KQGAFHAASM FKPDNPFCRI ILRPSYVYKG VLLHLPRCFA RRYLNGVDGV  300
IMLQIPEGKK WPVQCVYCND NLKFSKGWAE FVLDNNLDEG DVCIFELINT KEIVLKVTIF  360
RALRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-4424236123141B3 domain-containing transcription factor VRN1
4i1k_B3e-4424236123141B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.38160.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016739204.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1U8NMP30.0A0A1U8NMP3_GOSHI; B3 domain-containing transcription factor VRN1-like
STRINGGorai.012G151000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-83B3 family protein