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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_D04G1577 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | HB-PHD | ||||||||
| Protein Properties | Length: 963aa MW: 105496 Da PI: 6.5362 | ||||||||
| Description | HB-PHD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 41.8 | 1.8e-13 | 890 | 932 | 10 | 52 |
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52
++ L++ F++n+yp+++++e LAk+lg+t rqV+ WF N R
Gh_D04G1577 890 AVTQGLQKSFKQNQYPDRAMKESLAKELGITFRQVSKWFENAR 932
56889************************************99 PP
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| 2 | PHD | 42.3 | 1.7e-14 | 482 | 537 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51
+C++Cg+ ++++++lCdg C++ fH++Cl+++l +e++p + wlC+ C++k
Gh_D04G1577 482 FCAICGSkdIPANNDIILCDGaCDRGFHQYCLQPPLLKEDIPPDdeGWLCPGCDCK 537
7******554459*******66*******************99999*******985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57903 | 1.06E-14 | 472 | 540 | IPR011011 | Zinc finger, FYVE/PHD-type |
| Gene3D | G3DSA:3.30.40.10 | 2.6E-14 | 479 | 536 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| PROSITE profile | PS50016 | 11.332 | 480 | 537 | IPR019787 | Zinc finger, PHD-finger |
| Pfam | PF00628 | 9.4E-12 | 482 | 537 | IPR019787 | Zinc finger, PHD-finger |
| CDD | cd15504 | 2.87E-26 | 482 | 534 | No hit | No description |
| SMART | SM00249 | 3.1E-11 | 482 | 535 | IPR001965 | Zinc finger, PHD-type |
| PROSITE pattern | PS01359 | 0 | 483 | 534 | IPR019786 | Zinc finger, PHD-type, conserved site |
| Gene3D | G3DSA:1.10.10.60 | 3.0E-14 | 870 | 932 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 7.27E-12 | 874 | 933 | IPR009057 | Homeodomain-like |
| SMART | SM00389 | 4.4E-12 | 880 | 942 | IPR001356 | Homeobox domain |
| Pfam | PF00046 | 8.1E-11 | 890 | 932 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 2.20E-12 | 892 | 932 | No hit | No description |
| PROSITE profile | PS50071 | 12.957 | 895 | 938 | IPR001356 | Homeobox domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| GO:0008270 | Molecular Function | zinc ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 963 aa Download sequence Send to blast |
MIEVEHTGGS SSQANSENGN HSHFHPEEST SELANEFRSE CLLTEANGSG FMNTETSEET 60 AEHSQPLCND LSKNTISESL RLLPEDSSKN IQADQISSPQ LCSAEPTVSS GELPEQQQQL 120 DSQSLPNGIG NSLSTGVSNE AVELNPKDII MSNGGKHLQL PSKDANPLGL PQELASTNPT 180 IQQPDRHCED MSKDSGLEQH ETTPKNLVKN SGQRKGGKTS KQVQKKNLRS LRSSDRVLRS 240 KSQEKSKATE LSKKSTATEL SKKSTATESS KKSTVTDSSK KSTATESSKK STVTDSSKKS 300 TATESSKKPT ATESSKKSTA TESSKKPTAT ESSKKSTATE SSKKSTATES SKKSTATESS 360 NNLTNVGPSK QQKRKKRKRE KKEEKKEVSD EYLRIRKHLR YLLNRISYER CLIAAYSAEG 420 WKGLSLEKLK PEKELQRAAS EILRRKLKIR DLFQRIESLC TEGRLAESLF DSEGEIDSED 480 IFCAICGSKD IPANNDIILC DGACDRGFHQ YCLQPPLLKE DIPPDDEGWL CPGCDCKFDC 540 IELVNESQGT NFSLEDSWEK VFPEAALAAG GQNQDPNYGL PSDDSDDNDY NPDISENDEK 600 DQEDESSSDE SDFTSTSDEV EVPAKVDPYL GLPSDDSEDD DYNPDGPDQD HDNVAKSESL 660 SSDFSSDSDD LGAMLVDDIS SQKGHMSNGS SRKSKSKKPK LGGKKSLNSE VLTTMEPASG 720 EDDATVSEKR SIPRLDYKRL YDETYGNVPS SSSDDEDWND GTAPRKKKKR NAEVATTSAN 780 GNASPTGSVS VSNGLKNPGE KRAPRRSANG LKQNRGERHT TKRSANGLKQ NPEEDHTPRR 840 RTRKKSNQKG TAKLPKATPK SPAKLPEPTP TPGSSGKKAG SSTYKRLGEA VTQGLQKSFK 900 QNQYPDRAMK ESLAKELGIT FRQVSKWFEN ARWFFNNSNN VSGESPKKVA GNDITPSDRR 960 KKK |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 372 | 378 | KRKKRKR |
| 2 | 373 | 378 | RKKRKR |
| 3 | 373 | 380 | RKKRKREK |
| 4 | 373 | 381 | RKKRKREKK |
| 5 | 374 | 381 | KKRKREKK |
| 6 | 839 | 845 | RRTRKKS |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Ghi.22999 | 0.0 | boll | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012459645.1 | 0.0 | PREDICTED: homeobox protein HAT3.1 | ||||
| Refseq | XP_012459646.1 | 0.0 | PREDICTED: homeobox protein HAT3.1 | ||||
| Refseq | XP_012459647.1 | 0.0 | PREDICTED: homeobox protein HAT3.1 | ||||
| Refseq | XP_012459648.1 | 0.0 | PREDICTED: homeobox protein HAT3.1 | ||||
| TrEMBL | A0A0D2V6S5 | 0.0 | A0A0D2V6S5_GOSRA; Uncharacterized protein | ||||
| STRING | Gorai.012G148900.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM7270 | 25 | 43 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G19510.1 | 4e-88 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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