PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G1577

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-PHD

Protein Properties

Length: 963aa MW: 105496 Da PI: 6.5362

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G1577	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41.8	1.8e-13	890	932	10	52
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++ L++ F++n+yp+++++e LAk+lg+t rqV+ WF N R Gh_D04G1577 890 AVTQGLQKSFKQNQYPDRAMKESLAKELGITFRQVSKWFENAR 932 56889************************************99 PP
2	PHD	42.3	1.7e-14	482	537	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C++Cg+ ++++++lCdg C++ fH++Cl+++l +e++p + wlC+ C++k Gh_D04G1577 482 FCAICGSkdIPANNDIILCDGaCDRGFHQYCLQPPLLKEDIPPDdeGWLCPGCDCK 537 7****554459***66***************99999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	1.06E-14	472	540	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	2.6E-14	479	536	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	11.332	480	537	IPR019787	Zinc finger, PHD-finger
Pfam	PF00628	9.4E-12	482	537	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	2.87E-26	482	534	No hit	No description
SMART	SM00249	3.1E-11	482	535	IPR001965	Zinc finger, PHD-type
PROSITE pattern	PS01359	0	483	534	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	3.0E-14	870	932	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.27E-12	874	933	IPR009057	Homeodomain-like
SMART	SM00389	4.4E-12	880	942	IPR001356	Homeobox domain
Pfam	PF00046	8.1E-11	890	932	IPR001356	Homeobox domain
CDD	cd00086	2.20E-12	892	932	No hit	No description
PROSITE profile	PS50071	12.957	895	938	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 963 aa Download sequence Send to blast
MIEVEHTGGS SSQANSENGN HSHFHPEEST SELANEFRSE CLLTEANGSG FMNTETSEET 60 AEHSQPLCND LSKNTISESL RLLPEDSSKN IQADQISSPQ LCSAEPTVSS GELPEQQQQL 120 DSQSLPNGIG NSLSTGVSNE AVELNPKDII MSNGGKHLQL PSKDANPLGL PQELASTNPT 180 IQQPDRHCED MSKDSGLEQH ETTPKNLVKN SGQRKGGKTS KQVQKKNLRS LRSSDRVLRS 240 KSQEKSKATE LSKKSTATEL SKKSTATESS KKSTVTDSSK KSTATESSKK STVTDSSKKS 300 TATESSKKPT ATESSKKSTA TESSKKPTAT ESSKKSTATE SSKKSTATES SKKSTATESS 360 NNLTNVGPSK QQKRKKRKRE KKEEKKEVSD EYLRIRKHLR YLLNRISYER CLIAAYSAEG 420 WKGLSLEKLK PEKELQRAAS EILRRKLKIR DLFQRIESLC TEGRLAESLF DSEGEIDSED 480 IFCAICGSKD IPANNDIILC DGACDRGFHQ YCLQPPLLKE DIPPDDEGWL CPGCDCKFDC 540 IELVNESQGT NFSLEDSWEK VFPEAALAAG GQNQDPNYGL PSDDSDDNDY NPDISENDEK 600 DQEDESSSDE SDFTSTSDEV EVPAKVDPYL GLPSDDSEDD DYNPDGPDQD HDNVAKSESL 660 SSDFSSDSDD LGAMLVDDIS SQKGHMSNGS SRKSKSKKPK LGGKKSLNSE VLTTMEPASG 720 EDDATVSEKR SIPRLDYKRL YDETYGNVPS SSSDDEDWND GTAPRKKKKR NAEVATTSAN 780 GNASPTGSVS VSNGLKNPGE KRAPRRSANG LKQNRGERHT TKRSANGLKQ NPEEDHTPRR 840 RTRKKSNQKG TAKLPKATPK SPAKLPEPTP TPGSSGKKAG SSTYKRLGEA VTQGLQKSFK 900 QNQYPDRAMK ESLAKELGIT FRQVSKWFEN ARWFFNNSNN VSGESPKKVA GNDITPSDRR 960 KKK

Sequence ? help Back to Top

Protein Sequence Length: 963 aa Download sequence Send to blast

MIEVEHTGGS SSQANSENGN HSHFHPEEST SELANEFRSE CLLTEANGSG FMNTETSEET  60
AEHSQPLCND LSKNTISESL RLLPEDSSKN IQADQISSPQ LCSAEPTVSS GELPEQQQQL  120
DSQSLPNGIG NSLSTGVSNE AVELNPKDII MSNGGKHLQL PSKDANPLGL PQELASTNPT  180
IQQPDRHCED MSKDSGLEQH ETTPKNLVKN SGQRKGGKTS KQVQKKNLRS LRSSDRVLRS  240
KSQEKSKATE LSKKSTATEL SKKSTATESS KKSTVTDSSK KSTATESSKK STVTDSSKKS  300
TATESSKKPT ATESSKKSTA TESSKKPTAT ESSKKSTATE SSKKSTATES SKKSTATESS  360
NNLTNVGPSK QQKRKKRKRE KKEEKKEVSD EYLRIRKHLR YLLNRISYER CLIAAYSAEG  420
WKGLSLEKLK PEKELQRAAS EILRRKLKIR DLFQRIESLC TEGRLAESLF DSEGEIDSED  480
IFCAICGSKD IPANNDIILC DGACDRGFHQ YCLQPPLLKE DIPPDDEGWL CPGCDCKFDC  540
IELVNESQGT NFSLEDSWEK VFPEAALAAG GQNQDPNYGL PSDDSDDNDY NPDISENDEK  600
DQEDESSSDE SDFTSTSDEV EVPAKVDPYL GLPSDDSEDD DYNPDGPDQD HDNVAKSESL  660
SSDFSSDSDD LGAMLVDDIS SQKGHMSNGS SRKSKSKKPK LGGKKSLNSE VLTTMEPASG  720
EDDATVSEKR SIPRLDYKRL YDETYGNVPS SSSDDEDWND GTAPRKKKKR NAEVATTSAN  780
GNASPTGSVS VSNGLKNPGE KRAPRRSANG LKQNRGERHT TKRSANGLKQ NPEEDHTPRR  840
RTRKKSNQKG TAKLPKATPK SPAKLPEPTP TPGSSGKKAG SSTYKRLGEA VTQGLQKSFK  900
QNQYPDRAMK ESLAKELGIT FRQVSKWFEN ARWFFNNSNN VSGESPKKVA GNDITPSDRR  960
KKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	372	378	KRKKRKR
2	373	378	RKKRKR
3	373	380	RKKRKREK
4	373	381	RKKRKREKK
5	374	381	KKRKREKK
6	839	845	RRTRKKS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.22999	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012459645.1	0.0	PREDICTED: homeobox protein HAT3.1
Refseq	XP_012459646.1	0.0	PREDICTED: homeobox protein HAT3.1
Refseq	XP_012459647.1	0.0	PREDICTED: homeobox protein HAT3.1
Refseq	XP_012459648.1	0.0	PREDICTED: homeobox protein HAT3.1
TrEMBL	A0A0D2V6S5	0.0	A0A0D2V6S5_GOSRA; Uncharacterized protein
STRING	Gorai.012G148900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7270	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-88	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain