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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gh_D04G1568 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 182aa MW: 20954.3 Da PI: 10.4195 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D04G1568 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 55.7 | 6.2e-18 | 17 | 62 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
k ienk r vtfsk r gi KK +ELS+LC++e++ i+fs+tgk
Gh_D04G1568 17 KMIENKEDRLVTFSKCRLGIYKKISELSILCGTEILFIVFSPTGKP 62
68******************************************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 182 aa
Download sequence Send
to blast |
MASTGKKTRG RKKIQMKMIE NKEDRLVTFS KCRLGIYKKI SELSILCGTE ILFIVFSPTG 60
KPFSFGCPSI ESVSNHFLSR NRPINDNTNI LIEAYRMVRT NKLVQHYNEV HSQMDAIKRK 120
KKVLVSAQQT SETNNTNHWW KTPIHQCNPR ELNELYSRIS ELAHLCHIAW CKKIANASSM 180
SA
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1hbx_A | 2e-14 | 2 | 71 | 3 | 72 | SERUM RESPONSE FACTOR |
| 1hbx_B | 2e-14 | 2 | 71 | 3 | 72 | SERUM RESPONSE FACTOR |
| 1hbx_D | 2e-14 | 2 | 71 | 3 | 72 | SERUM RESPONSE FACTOR |
| 1hbx_E | 2e-14 | 2 | 71 | 3 | 72 | SERUM RESPONSE FACTOR |
| 1k6o_B | 3e-14 | 2 | 65 | 2 | 65 | Serum response factor |
| 1k6o_C | 3e-14 | 2 | 65 | 2 | 65 | Serum response factor |
| 1srs_A | 2e-14 | 2 | 71 | 3 | 72 | PROTEIN (SERUM RESPONSE FACTOR (SRF)) |
| 1srs_B | 2e-14 | 2 | 71 | 3 | 72 | PROTEIN (SERUM RESPONSE FACTOR (SRF)) |
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