PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0880
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 388aa    MW: 43295.7 Da    PI: 7.1995
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0880genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.36.9e-101041411954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Gh_D04G0880 104 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 141
                  664459******************************88 PP
2BELL27.29.6e-1015365172
         BELL 51 slAlkaiSrhFrcLkdaiaeqi 72
                 +lAlk+iS++FrcLkdai++qi
  Gh_D04G0880 15 ALALKTISKQFRCLKDAITDQI 36
                 79*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075268.5E-51333IPR006563POX domain
PROSITE profilePS5007112.19582145IPR001356Homeobox domain
CDDcd000865.87E-1285146No hitNo description
SMARTSM003895.3E-985149IPR001356Homeobox domain
SuperFamilySSF466893.89E-1786151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-2988151IPR009057Homeodomain-like
PfamPF059201.4E-18102141IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MMMKHVYTQI TITPALALKT ISKQFRCLKD AITDQIRAAN KSLGEEEDGV GEAAKIEGSR  60
LKFVDHHLRQ QRALQQLGMI QHNAWRPQRG LPERSVSVLR AWLFEHFLHP YPKDSDKHML  120
AKQTGLTRSQ VSNWFINARV RLWKPMVEEM YLEETKEQEQ NGTSDDKTSK TENHEDSASK  180
STAPSCQNPG ENQKVSSMSI STASTSPLAG NAHQQSRFSL IGSSELEGIT QGSPKKPRSN  240
ELLQSPTSVP SMNMDMNQSE ASNEVSMKFS KDGYSFMGTN TDFMGGFGQY PIGEIGRFDA  300
EQFAPRFPGN GVSLTLGLPH CENLSLSGSH QNLIPNQTMQ MGRRLDIDEP NEFGAINLPT  360
PHSSAAYESI NLHNRKRFVA QLLPDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-1691149563Homeobox protein Meis2
3k2a_B2e-1691149563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.63441e-163boll| ovule| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016680593.10.0PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-113BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A1U8IW210.0A0A1U8IW21_GOSHI; BEL1-like homeodomain protein 1
STRINGGorai.009G396900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50082650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-105BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]