PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0684
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 464aa    MW: 52285.4 Da    PI: 5.9965
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0684genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.83.2e-140454601373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL++cA++v++g+le+a+  L+++s+laspdgd+mqR+aayfteALa+r+++ +++l kal++++ s  ++ +e+ ++klf+e++P+lk++++++
  Gh_D04G0684  45 LIRLLVACANHVAAGSLENANIGLEQISHLASPDGDTMQRIAAYFTEALANRMLKAWPGLHKALNSTKIS--SVPDEILVQKLFFELCPFLKLAYIIT 140
                  5799************************************************************999998..6************************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaI+ea+ege++vHiiD++  +++QW++L+q++++Rpegpp+lRiTg+++    +ke le+++ rL++ Ae+l++pf+fn+ ++ +le+l+le+Lrv
  Gh_D04G0684 141 NQAIVEAMEGEKMVHIIDLNSCEPAQWINLFQTFSARPEGPPHLRITGIHE----QKEVLEQMALRLTEEAEKLDIPFQFNP-IVCKLENLDLESLRV 233
                  ***************************************************....9**************************.5788*********** PP

         GRAS 197 kpgEalaVnlvlqlhrll..................................................desvsleserdevLklvkslsPkvvvvveq 244
                  k+gEalaV++vlqlh+ll                                                   +s++ + +  ++L +++ lsPkv+vv+eq
  Gh_D04G0684 234 KTGEALAVSSVLQLHSLLatddevprrnfnsppvsktrvlqmtqrtfgewlekepvhiynpssdiassPSSLAPAPKMGSFLAALRALSPKVMVVTEQ 331
                  *****************************************************************865333333336999****************** PP

         GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                  e++hn+++++er++eal++y+alfd+le++++r+  er+kvE++l+g+ei+n++aceg er+erhe+lekW  rle aGF+ vpls++ + qa +ll+
  Gh_D04G0684 332 ESNHNGPTLMERVIEALNFYAALFDCLESTVSRAPIERQKVEKMLFGEEIKNIIACEGGERKERHEKLEKWILRLELAGFGRVPLSYHGMLQAGRLLQ 429
                  ************************************************************************************************** PP

         GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  + + dgy+++ee+g+lv++W++rpL+s+SaW
  Gh_D04G0684 430 TNNYDGYKMKEENGCLVMCWQERPLYSISAW 460
                  ******************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.00619441IPR005202Transcription factor GRAS
PfamPF035141.1E-13745460IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MIPEGPSPVT SSPLQFFPWM SPSPGIGSPF PWLWELKPEE RGLWLIRLLV ACANHVAAGS  60
LENANIGLEQ ISHLASPDGD TMQRIAAYFT EALANRMLKA WPGLHKALNS TKISSVPDEI  120
LVQKLFFELC PFLKLAYIIT NQAIVEAMEG EKMVHIIDLN SCEPAQWINL FQTFSARPEG  180
PPHLRITGIH EQKEVLEQMA LRLTEEAEKL DIPFQFNPIV CKLENLDLES LRVKTGEALA  240
VSSVLQLHSL LATDDEVPRR NFNSPPVSKT RVLQMTQRTF GEWLEKEPVH IYNPSSDIAS  300
SPSSLAPAPK MGSFLAALRA LSPKVMVVTE QESNHNGPTL MERVIEALNF YAALFDCLES  360
TVSRAPIERQ KVEKMLFGEE IKNIIACEGG ERKERHEKLE KWILRLELAG FGRVPLSYHG  420
MLQAGRLLQT NNYDGYKMKE ENGCLVMCWQ ERPLYSISAW GFRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-673746011378Protein SCARECROW
5b3h_A1e-673746010377Protein SCARECROW
5b3h_D1e-673746010377Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO722681051e-160
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614530.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2P5WR610.0A0A2P5WR61_GOSBA; Uncharacterized protein
STRINGGorai.012G080500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]