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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G0387 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 313aa MW: 34648 Da PI: 8.9496 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 100.6 | 2.8e-31 | 49 | 168 | 2 | 108 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i el+ ++ ++ +++ ++++ +++++++++ Gh_D04G0387 49 FGGKDRHSKVFTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNEAKHEIEELPPLPIPQGNFAlNPQMPLNASQQPNKQdstggfcrak 146 689*************************************************************8888777763333333333333333344676665 PP TCP 89 ........kaaksaakskksqksaasal 108 + k++k++++a++ + Gh_D04G0387 147 skdivresS------KGSKRDEEASEGH 168 553333221......2222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.1E-29 | 51 | 173 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.564 | 51 | 109 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MIPSSEEAGS PIQEGKEDES SNKVRKGAST SSPLLRLKDP RIVRVSRAFG GKDRHSKVFT 60 IRGLRDRRVR LSVPTAIQLY DLQDRLGLNQ PSKVVDWLLN EAKHEIEELP PLPIPQGNFA 120 LNPQMPLNAS QQPNKQDSTG GFCRAKSKDI VRESSKGSKR DEEASEGHQV QTDYGLQRSN 180 HSLMPAQSNN AVSMPMPMPM PMPMPYGSYY HFEPSNFPLP HLGSHGFVAP QTEEVHNFNV 240 VPLSSTLSLS SGSQNHFQML SSGAQNPFAN PPQYSITQPD LRSFHLSIAP RLLPHSLNIN 300 GSQPGKEDEF PSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-18 | 56 | 110 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-18 | 56 | 110 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.1924 | 1e-168 | leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 82755515 | 1e-168 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, buds, flowers and immature siliques, and, to a lower extent, in roots. {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016722273.1 | 0.0 | PREDICTED: transcription factor TCP5-like | ||||
Swissprot | Q9S7W5 | 3e-45 | TCP13_ARATH; Transcription factor TCP13 | ||||
TrEMBL | A0A1U8M9I3 | 0.0 | A0A1U8M9I3_GOSHI; transcription factor TCP5-like | ||||
STRING | Gorai.012G048500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9134 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 3e-38 | plastid transcription factor 1 |
Publications ? help Back to Top | |||
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