PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0077
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 374aa    MW: 40554.7 Da    PI: 8.0583
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0077genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.39.1e-12427226
                 -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                 k e Cr+f+r G C+yG+rCkF H+
  Gh_D04G0077  4 KKEACRNFQR-GSCQYGERCKFLHV 27
                 889*******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-6228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.779329IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-8426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MHNKKEACRN FQRGSCQYGE RCKFLHVIQQ QPKSNAFGFG TQAISHQQKP NPFGFGVQNN  60
AQSKGANDFG NKQSQFKNTW TRSSASSGAP SLRQPDNQPQ ATNHRCNDPE SCKRIIAEDF  120
EHERPLWKLT CYSHWKNSPC DIVGDVSYEE LRAAAYDDAK RGLSLQSIIE RERNLLNSKL  180
VEFENFLRNP YRGPAGSAAA QQIPFPGATT IVLSPTTQNT VAPQSNVPPS VSSFSQLGAS  240
LNTGFSPGPS VFSANNVPSA NAFSFGNQQP NQSVAASFPT NMANFSNSSA INPAINQFSA  300
AAVSTQNFSS SSIQSPAFLN VSLSNSEAVG REATNVQLGN NLPTTVASGD SNIWLKEKWT  360
PGEIPEEAPP DAYV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.95700.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016718933.10.0PREDICTED: zinc finger CCCH domain-containing protein 16-like isoform X1
SwissprotQ9FWS31e-76C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A1U8LZV70.0A0A1U8LZV7_GOSHI; zinc finger CCCH domain-containing protein 16-like isoform X1
STRINGGorai.012G009900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.21e-90C3H family protein