 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gh_D03G1684 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
B3 |
| Protein Properties |
Length: 254aa MW: 28556.3 Da PI: 9.426 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D03G1684 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 35.4 | 1.8e-11 | 2 | 70 | 19 | 87 |
-HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87
p +f++e+ +kk++s ++l ++sg++W +++ rk +++ +l +G F+++n++++gD++ F+l+++
Gh_D03G1684 2 PCNFVKENLMKKHCS--VILCNSSGKTWIATFKQRKIGKKltSYLIAGCGTFARDNNIQVGDVCAFELINS 70
779*****8888886..***************876666666666777********************9874 PP
|
| 2 | B3 | 56.5 | 5e-18 | 150 | 245 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
f+ vl ps+v+ ++ l++p +fa+++ + +k+++ ++g+sW v + + + ++ ++l +GW +F+ +n+L++gD++vF+l+g e++++
Gh_D03G1684 150 FVIVLQPSHVHGNK-LSVPMNFARKYltmM-----HKKVIHLLSDGNSWPVIY--DPRFEWsyVFLCNGWHRFAVDNNLEVGDVCVFELTGGIETSMK 239
55666677777766.***********7532.....235666667*********..999999989999***********************99777799 PP
EEEE-S CS
B3 94 vkvfrk 99
v++++k
Gh_D03G1684 240 VTIYKK 245
999886 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 254 aa
Download sequence Send
to blast |
MPCNFVKENL MKKHCSVILC NSSGKTWIAT FKQRKIGKKL TSYLIAGCGT FARDNNIQVG 60
DVCAFELINS IHISFKVVIY QGQHANCHQS LAVTDVFHLV KRKAPSCAKR PVKHKAPSYA 120
SQGCPEPLTA LEKAKAFQMA GAFKSENPFF VIVLQPSHVH GNKLSVPMNF ARKYLTMMHK 180
KVIHLLSDGN SWPVIYDPRF EWSYVFLCNG WHRFAVDNNL EVGDVCVFEL TGGIETSMKV 240
TIYKKQAIED ENLG
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4i1k_A | 1e-15 | 128 | 244 | 27 | 141 | B3 domain-containing transcription factor VRN1 |
| 4i1k_B | 1e-15 | 128 | 244 | 27 | 141 | B3 domain-containing transcription factor VRN1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JX584907 | 9e-83 | JX584907.1 Gossypium hirsutum clone NBRI_GE18328 microsatellite sequence. |
