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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G1683 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 218aa MW: 24911.9 Da PI: 6.2414 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53 | 6.4e-17 | 31 | 110 | 17 | 96 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++p +f++eh +k+++ +tl ++sg++W +++ +k + +l++GW Fv++n+++++D++ F+l++++e +++v + Gh_D03G1683 31 TIPTEFVREHLMKEHR--SVTLCNSSGKTWIANFKQsqIGKNQYSYLQTGWGTFVRDNNIQVNDVCAFELINSTEISFKVVI 110 7*********878666..59999*******9999665444444489************************987666666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 18 | No hit | No description |
SMART | SM01019 | 6.4E-9 | 24 | 114 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.04E-18 | 29 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-19 | 30 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.1E-15 | 31 | 112 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.72E-18 | 31 | 112 | No hit | No description |
PROSITE profile | PS50863 | 13.253 | 32 | 114 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MYDRNEQNVS SIFSSTACKV EVCSLIFLLQ TIPTEFVREH LMKEHRSVTL CNSSGKTWIA 60 NFKQSQIGKN QYSYLQTGWG TFVRDNNIQV NDVCAFELIN STEISFKVVI YKGQHANCHQ 120 ILVSEMQYPY TRDNHSQSDE ILEQNIEESE DDDTTEILEV ISPSLKVREE LQSSCPRSHK 180 MMSSTNSAIK TKTVCNGIKG DKRTKSSYNS TVEDTRKV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012472259.1 | 1e-118 | PREDICTED: B3 domain-containing protein Os11g0197600-like | ||||
TrEMBL | A0A0D2RFB0 | 1e-134 | A0A0D2RFB0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G020200.1 | 1e-135 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM36330 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 3e-07 | B3 family protein |