PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G1680
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 437aa    MW: 49601.4 Da    PI: 10.8243
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G1680genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.69.9e-1822961292
                 HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3 12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                 k   l +p  f+ ++  +   + +++ +l++ sg+sW+v++  + ++g+y++ +GW++Fvk +gL+ gDf+vF l+++s+f  
  Gh_D03G1680 22 K---LKIPPAFL-KYvlK--GKVPTMFSLYSDSGNSWRVRV--EVQQGSYFFNSGWSKFVKYHGLEIGDFLVFFLVDSSTFDV 96
                 3...67******.77463..335779***************..*******************************998788744 PP
2B341.91.8e-131792551696
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  + +p+ fa+e g+ ke s+t++ + ++g  W ++   + +++++ l++GW++F ++n++ +gD+++F+++ +     +v++
  Gh_D03G1680 179 VFIPRYFAKETGLGKE-SITII-KGPRGGMWPMNT--TESGRQVRLGGGWSQFLHENDIVVGDTLLFQHIPNAINLVHVQI 255
                  68*********98874.55555.99**********..*******************************9866444455555 PP
3B349.38.9e-163474261699
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  + +p + a+e+g+ ke s   +++d++gr+W++++    + +++ l++GW++F ++n+L++gD+++F+++ +++   +++++rk
  Gh_D03G1680 347 IPVPTSVAKEMGLTKEPS--TVIKDSKGRKWRLNI--LVYARSVHLGAGWSKFMEENKLEVGDTLLFQHIPNTGNVIYFHIIRK 426
                  446777899999987654..7779***********..9999999**************************88888889998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-216104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.0858102IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-238106IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-209100No hitNo description
SMARTSM010195.0E-1411102IPR003340B3 DNA binding domain
PfamPF023622.2E-152297IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-16162257IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-17162253IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.66164259IPR003340B3 DNA binding domain
CDDcd100171.12E-11166257No hitNo description
SMARTSM010191.1E-7167259IPR003340B3 DNA binding domain
PfamPF023621.1E-10179247IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-17327425IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-17329426IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.112332427IPR003340B3 DNA binding domain
CDDcd100177.36E-12334425No hitNo description
SMARTSM010197.6E-6335427IPR003340B3 DNA binding domain
PfamPF023621.9E-13347426IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MTRKPKRSPS FFKILVGDFV TKLKIPPAFL KYVLKGKVPT MFSLYSDSGN SWRVRVEVQQ  60
GSYFFNSGWS KFVKYHGLEI GDFLVFFLVD SSTFDVFIYN RTACAKNSIL AAKKPKGRPL  120
GGNRQIEQTP SQKCTSASKK PRAVSRARNV SQEVEFIKEE TPKHVSFVLV VKKYLKYYVF  180
IPRYFAKETG LGKESITIIK GPRGGMWPMN TTESGRQVRL GGGWSQFLHE NDIVVGDTLL  240
FQHIPNAINL VHVQILNKAG YRNHGRGGRR GRQNKQANAS EKNTIIAIKQ KRGPPCRQIE  300
EPNSKITKGL SIGGERDITR KDEFESELTP KKASFVVVLK QYQKFYIPVP TSVAKEMGLT  360
KEPSTVIKDS KGRKWRLNIL VYARSVHLGA GWSKFMEENK LEVGDTLLFQ HIPNTGNVIY  420
FHIIRKARDG NHGKRNN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472261.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A0D2QEJ40.0A0A0D2QEJ4_GOSRA; Uncharacterized protein
STRINGGorai.003G020600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14995620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.15e-16B3 family protein