PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G1655
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 764aa    MW: 85511.5 Da    PI: 6.1336
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G1655genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.31e-2177132156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++eLe++F+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Gh_D03G1655  77 KKRYHRHTAHQIQELEAVFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 132
                  688999***********************************************998 PP
2START146.62.3e-462654912206
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                  la +a++elvk+   +ep+Wv+    ++g+evl   e s+              +++ea+r+s vv+m++ +lv  +++   +W e ++    +a+ +
  Gh_D03G1655 265 LAMSATDELVKMCRTNEPLWVRNN--KTGKEVLNLDEHSRMfhwplnlkqrsseFRTEASRDSSVVIMNSITLVDAFVNAH-KWMELFPsivaRAKCV 359
                  678899****************99..**********99999****************************************.******99999***** PP

                  EEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE....TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
        START  83 evissg.....galqlmvaelqalsplvp.RdfvfvRyirq...lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                  +vis+g     g lqlm+ael +lsplvp R+ +f+Ry++q   + +  w+ivd  +d   +   + s+   +++pSg+li++++ng+s+vtwveh++
  Gh_D03G1655 360 QVISQGvsgtnGCLQLMYAELHVLSPLVPtREAYFLRYCQQqnvEDETYWAIVDFPLDGFHNSL-QTSFPLYKRRPSGCLIQDMPNGYSRVTWVEHAE 456
                  *****************************************99888888*****9999887765.78888888************************* PP

                  --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                   +++ +h+++ ++v+sg+a+ga++w+a l+rqce+
  Gh_D03G1655 457 IEEKPIHQIFSHFVHSGMAFGANRWLAVLERQCER 491
                  *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.76E-2069135IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-2273140IPR009057Homeodomain-like
PROSITE profilePS5007117.36274134IPR001356Homeobox domain
SMARTSM003891.7E-2076138IPR001356Homeobox domain
CDDcd000864.79E-2077135No hitNo description
PfamPF000463.5E-1977132IPR001356Homeobox domain
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
PROSITE profilePS5084842.025255494IPR002913START domain
SuperFamilySSF559611.47E-29256493No hitNo description
CDDcd088753.49E-112259490No hitNo description
SMARTSM002342.6E-30264491IPR002913START domain
PfamPF018523.3E-39265491IPR002913START domain
SuperFamilySSF559611.04E-15509743No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MYADCEAISS MGGNMVVSSG TLFTSTFQNP NFTYLPLEPL PPMITKEENG SSLRGKEEMK  60
SGSESELQET TEQPLKKKRY HRHTAHQIQE LEAVFKECPH PDDKQRMKLS QELGLKPRQV  120
KFWFQNRRTQ MKAQQDRSEN VILRAENDSL KSEFYRLQAE LSKLVCPNCG GPPVPGGVSF  180
DELRIENARL GEELERVCAI ASRYIGRPIQ TMGELMPPSL ELDMNIYPRQ FLEPMPPPIL  240
SETPSYLDNN NLILMEEEKT IAMELAMSAT DELVKMCRTN EPLWVRNNKT GKEVLNLDEH  300
SRMFHWPLNL KQRSSEFRTE ASRDSSVVIM NSITLVDAFV NAHKWMELFP SIVARAKCVQ  360
VISQGVSGTN GCLQLMYAEL HVLSPLVPTR EAYFLRYCQQ QNVEDETYWA IVDFPLDGFH  420
NSLQTSFPLY KRRPSGCLIQ DMPNGYSRVT WVEHAEIEEK PIHQIFSHFV HSGMAFGANR  480
WLAVLERQCE RVASLMATNI PDIGVIPSPE ARKNLMRLSQ RMIRTFCVNI SSCSGQVWTA  540
VPDSTDDTVR ITTRKVSEAG QPNGLILCAV STTWLPYPHH HVFDLLRDER RRAQLEVLSN  600
GNALHEVAHI ANGSHPGNCI SLLRINVSSN SSQHVDLMLQ ESCTNKSGSL VVYSTVDVDS  660
VQLAMSGEDP SCIPLLPLGF FITPMELVND GGCKDEANGH NITTGSLLTV GLQVLASTIP  720
SAKINLSSIA AINNHLCTTV QQISSALSSN CIGSCNEGDN GKEK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.21200.0boll| ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO333553930.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in the L1 of apical inflorescence meristems, early flower primordia, carpel and stamen filament epidermis, ovule primordia, nucellus and chalaze. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5309140.0AF530914.1 Gossypium hirsutum homeodomain protein GhHOX2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016727300.10.0PREDICTED: homeobox-leucine zipper protein HDG5-like
RefseqXP_016727303.10.0PREDICTED: homeobox-leucine zipper protein HDG5-like
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLA0A1U8MKG20.0A0A1U8MKG2_GOSHI; homeobox-leucine zipper protein HDG5-like
STRINGGorai.003G185000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]