PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D03G1602

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 518aa MW: 57382.6 Da PI: 6.7253

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G1602	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	36.6	6.2e-12	4	30	9	35
GATA 9 TplWRrgpdgnktLCnaCGlyyrkkgl 35 TplWR+gp ++ LCnaCG ++r kg+ Gh_D03G1602 4 TPLWRNGPPEKPVLCNACGSRWRTKGT 30 ******88888*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	3.56E-6	2	33	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.6E-8	3	30	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	1.0E-9	3	30	IPR000679	Zinc finger, GATA-type
CDD	cd00202	5.52E-11	4	50	No hit	No description
Pfam	PF13919	3.1E-8	262	349	IPR028020	ASX homology domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MIGTPLWRNG PPEKPVLCNA CGSRWRTKGT LAKYTPLHAR AEPEDLRASR VKSISINKDR 60 EAKRKPNHDI AIVSPDYNLG FRKFMDEDTS NRSSSGSAIS NSESCAQFGS ADVSDLSGPS 120 QSNVWDSMVP SKKRTCVNRP KPSPVEKLTK DLCTILHEQQ SSYFSVSSDD DLLLESETPM 180 VSVEIGHGGI LIKHPSSIAR EEESEASSLS FENKQYSMNE AYSHSSSFLA YNDSKGVKYL 240 GHGIEKAKNP AGQGMQHEQL KRDKAQHEKP LILESRNLPL CNIELSDIIN FEEFVKHLTK 300 DEQQQLLQYL PPLDIAKLPE SLKSMFESPQ FEDNLCYFQQ LLEEGVFNIS VPGVNAEDCK 360 TLKRLALINL TRSHWVECHH GLKKCGSVGV SVITRGPNVV PLNNSATVKR SRDGQIPEAR 420 TLMSPKRVIM KATHENKELI DNESSCFSPR SLFALPPDGS SPMLGSLHFA NECSDQDLLL 480 DVPSNGTFPQ AELLHPTSSF GQQASTSSNS PHPHLVHP

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MIGTPLWRNG PPEKPVLCNA CGSRWRTKGT LAKYTPLHAR AEPEDLRASR VKSISINKDR  60
EAKRKPNHDI AIVSPDYNLG FRKFMDEDTS NRSSSGSAIS NSESCAQFGS ADVSDLSGPS  120
QSNVWDSMVP SKKRTCVNRP KPSPVEKLTK DLCTILHEQQ SSYFSVSSDD DLLLESETPM  180
VSVEIGHGGI LIKHPSSIAR EEESEASSLS FENKQYSMNE AYSHSSSFLA YNDSKGVKYL  240
GHGIEKAKNP AGQGMQHEQL KRDKAQHEKP LILESRNLPL CNIELSDIIN FEEFVKHLTK  300
DEQQQLLQYL PPLDIAKLPE SLKSMFESPQ FEDNLCYFQQ LLEEGVFNIS VPGVNAEDCK  360
TLKRLALINL TRSHWVECHH GLKKCGSVGV SVITRGPNVV PLNNSATVKR SRDGQIPEAR  420
TLMSPKRVIM KATHENKELI DNESSCFSPR SLFALPPDGS SPMLGSLHFA NECSDQDLLL  480
DVPSNGTFPQ AELLHPTSSF GQQASTSSNS PHPHLVHP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016721517.1	0.0	PREDICTED: GATA transcription factor 26-like
Swissprot	Q8W4H1	1e-135	GAT26_ARATH; GATA transcription factor 26
TrEMBL	A0A1U8M3Z0	0.0	A0A1U8M3Z0_GOSHI; GATA transcription factor 26-like
STRING	Gorai.003G177500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1606	27	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-122	GATA transcription factor 26