PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G1591
Common NameERF9
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 315aa    MW: 35441.5 Da    PI: 6.33
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G1591genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-18171221255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp+ +g   r +lg+f ta eAaka+++ + kl+g
  Gh_D03G1591 171 HYRGVRQRP-WGKFAAEIRDPTRRG--SRMWLGTFETAIEAAKAYDRTAFKLRG 221
                  8********.**********97665..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.2E-31170230IPR001471AP2/ERF domain
CDDcd000183.07E-29170229No hitNo description
SMARTSM003803.0E-35171235IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-21171230IPR016177DNA-binding domain
PfamPF008473.1E-12171221IPR001471AP2/ERF domain
PROSITE profilePS5103223.551171229IPR001471AP2/ERF domain
PRINTSPR003675.9E-10172183IPR001471AP2/ERF domain
PRINTSPR003675.9E-10195211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEASSEVISA LQYIKQYLLG EFSPVELGSV SSGNQWLPES KPRVSTPGSE SLLSSDSSLT  60
VSNFNCLDDD DDFFQFSTDF PGFQFESKPQ IIDLTTPKSL SLNAGAFEFE VKPQIAQIST  120
TKHKVSSNSS SQNRKRSLKI SLPHKMEQIQ FGKSDLAQAE PRVSNSEDKK HYRGVRQRPW  180
GKFAAEIRDP TRRGSRMWLG TFETAIEAAK AYDRTAFKLR GSKAILNFPL EAGTSDTSAD  240
DLERKRSRDD GEREERQVKA VKREKDDEVT KTRENGEGPL TPSNWKTFLD WDNDQKGFFN  300
VPLLSPLSFP QVVVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-29170230161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-29170236470ATERF1
3gcc_A2e-29170236470ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.98800.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4108650.0KC410865.1 Gossypium hirsutum ethylene-responsive transcription factor (ERF9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314277.10.0ethylene-responsive transcription factor 5-like
TrEMBLM4WYH80.0M4WYH8_GOSHI; Ethylene-responsive transcription factor
STRINGGorai.003G176200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.19e-59ethylene responsive element binding factor 5