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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G1080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 860aa MW: 95390.3 Da PI: 8.0605 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 67.4 | 3e-21 | 768 | 848 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev++Li++r ++++r++ k +++lWee+s + e g++rsp qCk+ w +l ++y++ k+ ++++ +++pyf++++ Gh_D03G1080 768 KWKPEEVKKLIKMRGDLHSRFQVVKGRMALWEEISTSLLEDGITRSPAQCKSLWASLVQKYEESKNEKRSH-----KSWPYFEDMN 848 7****************************************************************999996.....57******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.15.10 | 1.1E-68 | 76 | 326 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 2.14E-72 | 77 | 491 | IPR001279 | Metallo-beta-lactamase |
SMART | SM00849 | 3.7E-27 | 89 | 286 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF12706 | 3.5E-11 | 101 | 236 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF07521 | 1.6E-5 | 432 | 463 | IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain |
PROSITE profile | PS50090 | 7.909 | 761 | 825 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-4 | 764 | 827 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 7.5E-18 | 766 | 849 | No hit | No description |
CDD | cd12203 | 2.26E-22 | 767 | 832 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0060918 | Biological Process | auxin transport | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 860 aa Download sequence Send to blast |
MAASTSLSLC PYILCRKAGP RNRYISCSVG SPTPISTRRT KVPRKSSGRL DGARKSMEDS 60 VQRKMEQFYE GTAGPPLRVL PIGGLGEIGM NCMLVGHYDR YILIDAGVMF PDYDELGVQK 120 IIPDTTFIKK WSHKIEAVVI THGHEDHIGA LPWVIPALDP HTPIYASSFT MELIKKRLKE 180 NGIFVPSRLK VFKIRRRFKA GPFEIEPLRV THSIPDCCGL VLRCADGTIL HTGDWKIDES 240 PLDGKTFDRQ FLEELSKEGV TLMMSDSTNV LSPGRTISES AVADALLRHI SGAKGRIITT 300 QFASNIHRLG SIKAAADVTG RKLVFIGMSL RTYLDAAWKD GKAPIDPSTL VKAEDIDAYA 360 PKDLIIVTTG SQAEPRAALN LASYGSSHSF KLNKEDVILY SAKVIPGNES RVMKMLNRIS 420 EIGSTIVIGK NEGLHTSGHG YRGELEEVLQ IVKPQHFLPI HGELLFLKEH ELLGKSTGIR 480 HTTVIKNGEM LGVSHLRNRR VLSNGFSSLG KENLQLMYSD GDKAFGTSTE LCVDERLRIA 540 SDGIIVVSME ILRPQKIDGM VENTLKGKIK ITTRCLWLDK GKLLDTLHKA AHATLSSCPV 600 NCPLAHMERT VSEVLRKTVR KYSGKRPEVI AIALENPAGV LSDELNENLS GNYNAGFGLP 660 TLRKVVDGHP RRGPPNKMKV EDDGILHLEN ASEQSLLDDD AEAERFLPVE DTSTSIPDYT 720 ERLTPNTDDS DELEEHEPEV KSDGTASNGD DSEMTGSQPK SSKPKRNKWK PEEVKKLIKM 780 RGDLHSRFQV VKGRMALWEE ISTSLLEDGI TRSPAQCKSL WASLVQKYEE SKNEKRSHKS 840 WPYFEDMNKV LSDFEATATT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5a0t_A | 1e-86 | 77 | 635 | 19 | 560 | RIBONUCLEASE J |
5a0t_B | 1e-86 | 77 | 635 | 19 | 560 | RIBONUCLEASE J |
5a0v_A | 1e-86 | 77 | 635 | 19 | 560 | RIBONUCLEASE J |
5a0v_B | 1e-86 | 77 | 635 | 19 | 560 | RIBONUCLEASE J |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During the early stages of embryo development, first observed at the transition stage. In the heart and torpedo stages, predominantly present in the upper part of embryos. In seedlings, strongly expressed in shoot meristems, hypocotyls, in the vascular bundles of cotyledons, and in the veins of mature leaves. In reproductive organs, detected in inflorescences, especially in sepals, filaments, and stigmas, as well as in mature siliques and seeds. {ECO:0000269|PubMed:25871650}. | |||||
Uniprot | TISSUE SPECIFICITY: Moslty expressed in inflorescences, seedlings, leaves, flowers and flower buds, and, to a lower extent, in stems, siliques and roots. {ECO:0000269|PubMed:25871650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016730285.1 | 0.0 | PREDICTED: ribonuclease J-like isoform X1 | ||||
Swissprot | Q84W56 | 0.0 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A1U8MTY9 | 0.0 | A0A1U8MTY9_GOSHI; ribonuclease J-like isoform X1 | ||||
STRING | Gorai.003G119600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9539 | 26 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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