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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G0831 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 666aa MW: 73263.2 Da PI: 8.3096 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 95.1 | 6.5e-30 | 93 | 177 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ +r++ k+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++k+g+++r++++s +++f++lea Gh_D03G0831 93 RWPRQETLALLKIRSDMDGIFRDATVKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKDGRGGRQDGKS--YKFFSELEA 177 8*********************************************************************866665..******985 PP | |||||||
2 | trihelix | 110.1 | 1.4e-34 | 489 | 574 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a Gh_D03G0831 489 RWPKAEVLALINLRSGLETRYQEAGPKGPLWEEISAGMSRMGYKRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHQLDA 574 8*********************************************************************8.99999********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.016 | 90 | 152 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.597 | 92 | 150 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 7.9E-21 | 92 | 178 | No hit | No description |
CDD | cd12203 | 6.69E-26 | 92 | 157 | No hit | No description |
SMART | SM00717 | 0.0083 | 486 | 548 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.748 | 488 | 546 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 8.8E-24 | 488 | 575 | No hit | No description |
CDD | cd12203 | 6.21E-29 | 488 | 553 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 666 aa Download sequence Send to blast |
MQQGGGEGHQ SQYGEVGGGP TTDATSSSHM VSEQSEQLEE ASPISYRPPA AAIGNPDELM 60 MRLAEEGDEG DRLGGDHGGG VGGGAGGVAS GNRWPRQETL ALLKIRSDMD GIFRDATVKG 120 PLWEDVSRKL AELGYKRSAK KCKEKFENVH KYYKRTKDGR GGRQDGKSYK FFSELEALNT 180 TSVTLSKPPI TLATSASLDV APISVGIPMP ISSVWIPPTT TTTTTAIPMS SSMLPMPGSA 240 PPPPPATPFG ISFSSNSSSS SQGFEDEDEI GREPSTDMGG SSRKRKRQSS SREGCSSSSS 300 RKRMMEFFEG LMKQVMQKQE ALQQTFLESI EKREQDRMIR EEAWKRQEMA RLAREHELIA 360 QERAIASSRD AAIISFLQKI TGQTIQLPTT VSTIPSVPPP PTQPATPVVQ PPTPIPTAAP 420 PLHHPPSLPQ QKSHLHHQQQ QQAQNTQLVV KHNQQQEPIP SEVIMAIPEQ KVPPQEIGGS 480 EGIKPASSRW PKAEVLALIN LRSGLETRYQ EAGPKGPLWE EISAGMSRMG YKRSAKRCKE 540 KWENINKYFK KVKESNKKRP EDAKTCPYFH QLDALYRKKI LGSGSSSFSD QNRFEGETSQ 600 QHQDPPMEAP QHSHDQSENK TGTTIDVLTS KENSPGSLFG KGNGRATKKS EDIVREQMEE 660 QEMQMQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 143 | KRSAKKCKE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.18774 | 0.0 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012470321.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1 | ||||
TrEMBL | A0A0D2QGT9 | 0.0 | A0A0D2QGT9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G072300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6226 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33240.1 | 2e-52 | GT-2-like 1 |