PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0821
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 398aa    MW: 44376.5 Da    PI: 8.469
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0821genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.72.1e-32101205199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae+h    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  Gh_D03G0821 101 FDKVVTPSDVGKLNRLVIPKQHAEKHfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGvGElGKHRL 198
                  89***************************966778999*************************************************66699999999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  Gh_D03G0821 199 FIDWRRR 205
                  9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-4292213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-3098206IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-2799188No hitNo description
PROSITE profilePS5086314.649101206IPR003340B3 DNA binding domain
PfamPF023629.8E-30101205IPR003340B3 DNA binding domain
SMARTSM010198.9E-23101206IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDFGFNEEGN KFPFSYSSSS SSPSSSSSQH KTQMAPPLSN TRWEAQAHQI HDGHHRQMSP  60
NWLNNRYEPE EDNEAATATA STEADSTLSA SAANIEKEHL FDKVVTPSDV GKLNRLVIPK  120
QHAEKHFPLD SSTNEKGLLL NFEDRNGKPW RFRYSYWNSS QSYVMTKGWS RFVKDKKLDA  180
GDIVSFQRGV GELGKHRLFI DWRRRPDGPD PVSFHPHTHH LSLHRSNTPW SPLLMRPPPT  240
ARDRFQLSQI NPLNRNSYYG GFPTGNNVVN PGGTMGSVLF FRSAAAPTME WQQQPGGVVE  300
PIVFDSVPVV QGTGAAAAKR LRLFGVNMEC PIPESHNPDM LSTTTIPNTT MASQNPQLSS  360
SSQHPLQLRL YNGTPVLPPI DFLSANKGKA SLSLDFDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-65962063114B3 domain-containing transcription factor NGA1
5os9_B6e-65962063114B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016740387.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like
TrEMBLA0A1U8NN230.0A0A1U8NN23_GOSHI; B3 domain-containing protein Os03g0120900-like
STRINGGorai.003G073600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.18e-75B3 family protein