PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0450
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 376aa    MW: 40925 Da    PI: 6.046
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0450genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.4e-21157206255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae+Aa+a+++a+++++g
  Gh_D03G0450 157 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEDAARAYDEAALRFRG 206
                  7********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.7E-33157215IPR001471AP2/ERF domain
SMARTSM003803.7E-37157220IPR001471AP2/ERF domain
PfamPF008472.4E-14157206IPR001471AP2/ERF domain
PROSITE profilePS5103225.515157214IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-23157215IPR016177DNA-binding domain
PRINTSPR003675.6E-12158169IPR001471AP2/ERF domain
CDDcd000186.67E-29165216No hitNo description
PRINTSPR003675.6E-12180196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MYQLMMTRED GSSSAAVAEA VPSSSLMLSD VCRDREMSVM VSALTHVVAG DVPADDEELS  60
GNEYLDWRSN NINPSLGFCG IKRGREEVDG CATGSGGVGR MAVESVANLC SQFVHLPHGG  120
SSSAVAGVTE ANTPAQLVPT YEYNSNENNN REEPRRRYRG VRQRPWGKWA AEIRDPFKAA  180
RVWLGTFDTA EDAARAYDEA ALRFRGNKAK LNFPENVKLR SVPPNQTATH FPISDSPNTH  240
FSIPTSTEPI VHHSQSHYSV PNPQVAGGYL DYSQLFLGSS TSSFPREQQL QQLRQNQPIY  300
PYDRTVLSSS VSSRAQSSSL SSSSPASPPT SYPMVFPLQA SGYQFNLGNS SEGGGIGDFS  360
VHSWSSDSSQ YTSTTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-24156217163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.158090.0ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2598090.0KP259809.1 Gossypium barbadense ethylene-responsive element binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016740962.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A1U8NPP00.0A0A1U8NPP0_GOSHI; ethylene-responsive transcription factor ABR1-like
STRINGGorai.003G048800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.11e-26ERF family protein