PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G0203 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HSF | ||||||||
Protein Properties | Length: 295aa MW: 32566.2 Da PI: 6.3137 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 121.1 | 5.9e-38 | 10 | 101 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d++++++isw+eng+sfvv+++ +fak++Lp+yFkh+nf+SFvRQLn+YgF+kv ++ weF++++Fk+g+kell++i+ Gh_D03G0203 10 FLIKTYQLVDDPTTDDVISWNENGTSFVVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKVVPDK---------WEFANENFKRGQKELLSDIR 97 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k+ Gh_D03G0203 98 RRKT 101 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.5E-39 | 3 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.7E-62 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.17E-35 | 7 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 9.9E-33 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.4E-21 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.4E-21 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 49 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.4E-21 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.20.5.370 | 0.001 | 157 | 190 | IPR014751 | DNA repair protein XRCC4, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006302 | Biological Process | double-strand break repair | ||||
GO:0006310 | Biological Process | DNA recombination | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MAQRSVPAPF LIKTYQLVDD PTTDDVISWN ENGTSFVVWK TADFAKDLLP NYFKHNNFSS 60 FVRQLNTYGF RKVVPDKWEF ANENFKRGQK ELLSDIRRRK TVTTSPANNP ANGKTSGARA 120 SSPTNSGEDL GSTSTSTSPE SKNPGSVETT PAANTNQYAD LSDENEKLKK DNEMLSSELA 180 QAKKQCDELV AFLTECVKVG PDQIDRIMRQ GNGGSTLEGD DLGRFYGVDD NDDDEKGGGE 240 DGNGSLKLFG VWLKSAGKKR AREEKIVYGG PHAKEMKTID FRHVALMMKS GKVCN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-27 | 5 | 101 | 25 | 131 | Heat shock factor protein 1 |
5d5v_B | 3e-27 | 5 | 101 | 25 | 131 | Heat shock factor protein 1 |
5d5v_D | 3e-27 | 5 | 101 | 25 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.7997 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ702445 | 0.0 | KJ702445.1 Gossypium hirsutum heat shock transcription factor (HSF3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016692301.1 | 0.0 | PREDICTED: heat shock factor protein HSF24-like | ||||
Swissprot | P22335 | 1e-114 | HSF24_SOLPE; Heat shock factor protein HSF24 | ||||
TrEMBL | A0A1U8JPT5 | 0.0 | A0A1U8JPT5_GOSHI; heat shock factor protein HSF24-like | ||||
STRING | Gorai.003G023500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6101 | 25 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 6e-99 | heat shock factor 4 |
Publications ? help Back to Top | |||
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