PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0197
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 117aa    MW: 13499.9 Da    PI: 10.9229
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0197genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.91.1e-195101196
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                  f+k+l  s + +++rl+lp k++++   +     + lt++de+gr+W + +++r+++    vl++GW +Fvk + Lk gD ++Fkl+ +   + ++++
  Gh_D03G0197   5 FVKIL--SKTDTEKRLSLPTKYMKHLpRIRRGHAVNLTVMDEQGRQWHFGYTIRRNGHPkPVLSAGWHDFVKGKYLKPGDQIIFKLEANdAAALYTIG 100
                  88999..77888889********6559666667899***************885554445**************************977455555555 PP

                  E CS
           B3  96 v 96 
                  v
  Gh_D03G0197 101 V 101
                  5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.5483105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-20493IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-17492IPR015300DNA-binding pseudobarrel domain
PfamPF023628.5E-165102IPR003340B3 DNA binding domain
SMARTSM010198.8E-115102IPR003340B3 DNA binding domain
CDDcd100178.11E-22589No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MALQFVKILS KTDTEKRLSL PTKYMKHLPR IRRGHAVNLT VMDEQGRQWH FGYTIRRNGH  60
PKPVLSAGWH DFVKGKYLKP GDQIIFKLEA NDAAALYTIG VKRRIRLLGT EVWTAVC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472265.12e-81PREDICTED: B3 domain-containing transcription factor VAL3-like
TrEMBLA0A0D2QEL43e-82A0A0D2QEL4_GOSRA; Uncharacterized protein
STRINGGorai.003G022700.15e-83(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2207145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.14e-12VP1/ABI3-like 3