PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_D03G0184

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 216aa MW: 23977.6 Da PI: 10.333

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G0184	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.1	2.4e-11	2	75	18	96
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +p++f+ee g+ k + +++++ +s W + + +s++++l+ GW++F ++n++ gD+++F+++ +++ +v+v Gh_D03G0184 2 IPRSFTEEAGLGKVS--MVMIKGPS-GMWPMMT--TFSSKQVLLSVGWSKFLHENEIVIGDTLLFEHVPNTGHLIHVQV 75 9******888655..45555555.57*..999999***********************9876666566665 PP
2	B3	47.8	2.6e-15	117	197	16	99
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ +k fa+e ++ +e s +++d++gr+We+++ ++ ks + l++GW++Fv +n+L++gD++ F+++ +++ ++k+++k Gh_D03G0184 117 VCSSKFFAKETSLAEEPS--KVIKDSDGRKWELNILVDAKS-NVRLGAGWSQFVLENRLEAGDTISFQHMPHTGNVIHFKIISK 197 343556677776665443..4558*********877777.579*********************9977888788888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.702	1	79	IPR003340	B3 DNA binding domain
CDD	cd10017	3.34E-10	2	75	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.0E-10	2	78	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.037	2	79	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-8	2	72	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.41E-11	2	74	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.111	102	198	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0013	105	198	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-12	113	197	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.2E-12	121	194	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.28E-11	121	187	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.89E-12	123	196	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
GIPRSFTEEA GLGKVSMVMI KGPSGMWPMM TTFSSKQVLL SVGWSKFLHE NEIVIGDTLL 60 FEHVPNTGHL IHVQVANKDG TGNCGSLAGK RPRDRPREQT ELPPSTKYAS SSKRTKVCSS 120 KFFAKETSLA EEPSKVIKDS DGRKWELNIL VDAKSNVRLG AGWSQFVLEN RLEAGDTISF 180 QHMPHTGNVI HFKIISKARA ANMVMEETRE KKPVKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016690955.1	1e-160	PREDICTED: B3 domain-containing protein REM13-like isoform X1
TrEMBL	A0A1U8JKY9	1e-159	A0A1U8JKY9_GOSHI; B3 domain-containing protein REM13-like isoform X1
STRING	Gorai.003G020700.1	4e-76	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14995	6	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24680.2	3e-09	B3 family protein