PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 674aa MW: 73574.5 Da PI: 7.4353

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G0175	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.3e-09	467	504	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Gh_D03G0175 467 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 504 664559******************************88 PP
2	BELL	93.2	2.4e-30	344	398	18	72
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +Vd+rY++y+eq+qt+++sF+ v+g+g+a pYt+lA+ka+SrhFrcLkdai++q+ Gh_D03G0175 344 KVDRRYNHYCEQMQTIVNSFDLVMGYGAAIPYTALAQKAMSRHFRCLKDAISSQL 398 7***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.0E-65	266	396	IPR006563	POX domain
Pfam	PF07526	2.7E-39	271	395	IPR006563	POX domain
PROSITE profile	PS50071	12.455	445	508	IPR001356	Homeobox domain
SMART	SM00389	1.2E-9	448	512	IPR001356	Homeobox domain
CDD	cd00086	8.63E-13	448	509	No hit	No description
SuperFamily	SSF46689	2.78E-17	449	515	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.8E-29	451	514	IPR009057	Homeodomain-like
Pfam	PF05920	3.3E-18	465	504	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence Send to blast
MASQGYHHHH HHHHHHQAAA GIFSFSNGFE RSAINHQEQQ QQLVQQIRRD KLRIQGFEPP 60 PPPLVGIEEE ESNALPVYEP TGMLSSEMFY FPSSVTVTAA STELLDQSLQ ANYRGQLGES 120 KNHRDSLAQQ QQLPSINADS AAAMHLFLMN PQTRSPSPPP PQPQPPPPGF HGGAFPPQFT 180 WVPDNSHEGG HGQGQGLSLS LSSLQHLEAA KLYYNQGGAA GGADGGGSSS ATATAQFQYK 240 HDHHSPHQPL GLVQNHQFHV GYNSSLGMVN VLRNSKYTKP AQELLEEFCS VGSGRFKKKK 300 LGKNNINPSS NPSNDGTTTN GSSSSTKDLP PFSASDRIEH QRRKVDRRYN HYCEQMQTIV 360 NSFDLVMGYG AAIPYTALAQ KAMSRHFRCL KDAISSQLKH SCELLGEKDG VGTSGITKGE 420 TPRLRMLEQS LRQQKAFHQI GMMEHEAWRP QRGLPERSVN ILRAWLFEHF LHPYPSDADK 480 HLLARQTGLS RNQVSNWFIN ARVRLWKPMV EEMYQQESKE GGDNNKGTRT NNNAAQTSTP 540 STTAVGGAGG SSPPPQPPEN DPSLIGTNTT QCFSENQLTN TGTSTTNTSI ATEVTPPVSD 600 SDIHQRLLAV TDDTCHRGSN TIVGTITAGN TDIGSTLIRF GTTGGDVSLT LGLRHAGNMP 660 DKASSFSVTD FGGC

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence Send to blast

MASQGYHHHH HHHHHHQAAA GIFSFSNGFE RSAINHQEQQ QQLVQQIRRD KLRIQGFEPP  60
PPPLVGIEEE ESNALPVYEP TGMLSSEMFY FPSSVTVTAA STELLDQSLQ ANYRGQLGES  120
KNHRDSLAQQ QQLPSINADS AAAMHLFLMN PQTRSPSPPP PQPQPPPPGF HGGAFPPQFT  180
WVPDNSHEGG HGQGQGLSLS LSSLQHLEAA KLYYNQGGAA GGADGGGSSS ATATAQFQYK  240
HDHHSPHQPL GLVQNHQFHV GYNSSLGMVN VLRNSKYTKP AQELLEEFCS VGSGRFKKKK  300
LGKNNINPSS NPSNDGTTTN GSSSSTKDLP PFSASDRIEH QRRKVDRRYN HYCEQMQTIV  360
NSFDLVMGYG AAIPYTALAQ KAMSRHFRCL KDAISSQLKH SCELLGEKDG VGTSGITKGE  420
TPRLRMLEQS LRQQKAFHQI GMMEHEAWRP QRGLPERSVN ILRAWLFEHF LHPYPSDADK  480
HLLARQTGLS RNQVSNWFIN ARVRLWKPMV EEMYQQESKE GGDNNKGTRT NNNAAQTSTP  540
STTAVGGAGG SSPPPQPPEN DPSLIGTNTT QCFSENQLTN TGTSTTNTSI ATEVTPPVSD  600
SDIHQRLLAV TDDTCHRGSN TIVGTITAGN TDIGSTLIRF GTTGGDVSLT LGLRHAGNMP  660
DKASSFSVTD FGGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	454	512	5	63	Homeobox protein Meis2
3k2a_B	2e-16	454	512	5	63	Homeobox protein Meis2
4xrm_A	2e-16	454	512	5	63	Homeobox protein Meis2
4xrm_B	2e-16	454	512	5	63	Homeobox protein Meis2
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269\|PubMed:17873098}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX622544	1e-142	JX622544.1 Gossypium hirsutum clone NBRI_GE69320 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016692336.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-151	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A1U8JPY6	0.0	A0A1U8JPY6_GOSHI; BEL1-like homeodomain protein 4
STRING	Gorai.003G018100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-134	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]