PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0149
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 600aa    MW: 65819.7 Da    PI: 4.771
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0149genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.88.7e-1142336002374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   ++Ll+cA+ +++++ e+a + La+l+e +s++gdp++R+a+yfteAL++rl++   ++ + l++ et+   s++ + ++k++++++P+ kf+hltaN
  Gh_D03G0149 233 LKALLDCAT-LADSEPERAIKSLAKLKESVSEHGDPTERVAFYFTEALHSRLSH---QTDQRLTMIETT---SEDFTLSYKALNDACPYSKFAHLTAN 323
                  689*****9.5667999999*********************************9...666677777777...89999********************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  qaIlea+++++++Hi+Df+i qG+QW+aLlqaLa+R++g+p ++Ri g+ +p  g   + +l +tg+rL++f + l+++fef++ + + +++l+ +++
  Gh_D03G0149 324 QAILEATDRASKIHIVDFGIVQGVQWAALLQALATRSAGKPtRIRISGIPAPVLGstPAPSLYATGNRLRDFSKLLDLNFEFEP-ILTPVTELTGSSF 420
                  *************************************77666*********998888999************************.7999********* PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  rv+++E+laVn++lql++lld++ +  +   + L l ksl+Pk+v++ e ea++n+  Fl+rf +al+yysa+f+sle +lpr+s eri vE++llgr
  Gh_D03G0149 421 RVDEDEVLAVNFMLQLYNLLDSTPAAVE---TALALAKSLNPKIVTLGEYEASLNRVGFLNRFKNALRYYSAVFESLEPNLPRDSPERIQVEKHLLGR 515
                  ********************88888888...9****************************************************************** PP

         GRAS 293 eivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  +i  v+  e+a  +rer+e +e+W+  +e +GF++v+ls++a +qak ll +++ s  y++ e++  ++ l W++ pL++vS+Wr
  Gh_D03G0149 516 KIAGVIGREEAGtQRERMEDKEQWKILMEISGFETVTLSHYAISQAKILLWNYNySSSYSLIESQPGFLsLAWNEVPLLTVSSWR 600
                  *******99987699***************************************9999**9999988888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.206206578IPR005202Transcription factor GRAS
PfamPF035143.0E-111233600IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MAYMCADNGN LMAIAQQVIK QKQEQEQQQQ QQQQQQQQQQ LLGLNPFSLN PWSSTTHHGV  60
SSSGNVGYGL TGPGFTDPFQ GDAGEGFQFP NMEHHHSIGF RFPDFGGGAG GEFDSDEWMD  120
SLMNGGGHST DTSNLPSGCD AWQNSADFGI YGADPFTACP SRLTLTCSPP SNLNRVIPTT  180
TLPAWPPSSP PPPPQVTVEE TKTSSPQNQN PTINDGAGIS SGSPETDLSP PLLKALLDCA  240
TLADSEPERA IKSLAKLKES VSEHGDPTER VAFYFTEALH SRLSHQTDQR LTMIETTSED  300
FTLSYKALND ACPYSKFAHL TANQAILEAT DRASKIHIVD FGIVQGVQWA ALLQALATRS  360
AGKPTRIRIS GIPAPVLGST PAPSLYATGN RLRDFSKLLD LNFEFEPILT PVTELTGSSF  420
RVDEDEVLAV NFMLQLYNLL DSTPAAVETA LALAKSLNPK IVTLGEYEAS LNRVGFLNRF  480
KNALRYYSAV FESLEPNLPR DSPERIQVEK HLLGRKIAGV IGREEAGTQR ERMEDKEQWK  540
ILMEISGFET VTLSHYAISQ AKILLWNYNY SSSYSLIESQ PGFLSLAWNE VPLLTVSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1492296001375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.210570.0boll| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5255011e-111HQ525501.1 Gossypium herbaceum clone NBRI_D_EYT27PB02CZHKW simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469438.10.0PREDICTED: scarecrow-like protein 4
RefseqXP_012469439.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A0D2QLT30.0A0A0D2QLT3_GOSRA; Uncharacterized protein
STRINGGorai.003G015400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein