PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G0134 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 237aa MW: 26642.4 Da PI: 8.1537 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.3 | 3.7e-33 | 57 | 112 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrY+eClkNhAa++Ggh+vDGCgEfmps geegt+aa+kCaAC+CHRnFHR+e + Gh_D03G0134 57 VVRYRECLKNHAATMGGHVVDGCGEFMPS-GEEGTMAAMKCAACECHRNFHRKEING 112 589*************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-21 | 57 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.2E-30 | 58 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.1E-30 | 59 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.453 | 60 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.26E-19 | 167 | 234 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-29 | 169 | 235 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.9E-27 | 173 | 230 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MELRDQDKEM GLPLPLSSSQ TPNPRPPQTL NHYPNIDPLP PGSVAGAEPE PVGSSLVVRY 60 RECLKNHAAT MGGHVVDGCG EFMPSGEEGT MAAMKCAACE CHRNFHRKEI NGESQYLPPL 120 PRRNGVVHLQ QQPIRFPAPV MMSFGGGGGG TAEESSSEDL RHDELINVPQ SSKKRFRTKF 180 SQDQKEKMME FAETLGWRIQ KQDEHELQMF CSQVGVKRQV FKVWMHNNKQ AMKKKQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-22 | 172 | 231 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012469414.1 | 1e-179 | PREDICTED: zinc-finger homeodomain protein 6-like | ||||
Swissprot | Q9ZPW7 | 7e-67 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A0D2MHX9 | 1e-177 | A0A0D2MHX9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G014100.1 | 1e-178 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6515 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 6e-64 | homeobox protein 24 |