PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0086
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 315aa    MW: 35294.2 Da    PI: 8.7425
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0086genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-094092154
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 r++ +  rE+ RRdr+N+ f eL   l +    ++ +K++Ka+iL  A++ + +L
  Gh_D03G0086 40 RKVQKADREKLRRDRLNEQFLELGNTLGNvY--PDRPKNDKATILVGAIQTLEDL 92
                 5677889**********************87..58888***********988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.93992IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-1140115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-74092IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-54097No hitNo description
SuperFamilySSF474592.36E-1240120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-54598IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF060051.6E-785134IPR009252Cell division protein ZapB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000917Biological Processbarrier septum assembly
GO:0043093Biological ProcessFtsZ-dependent cytokinesis
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MNHQRKPNDF SEAIAADLGT SNPEPRQRLE MEAEDPIAAR KVQKADREKL RRDRLNEQFL  60
ELGNTLGNVY PDRPKNDKAT ILVGAIQTLE DLTAEVKRLK AERSSLTEES RELTQENNEL  120
REEKASVKAN IENLTVQYQQ SRMMMFPWTG IDSSSVMAPP YPYPVPLPVT TGPIVMHPSL  180
QPYPFFGNHN PGAINNPCST FMPYSTMTSN PLIEQPSSQY TSSSHTSSKR DSKSKLADHQ  240
RGSNRESNGS NNVRMKLELK NPGSSTNEDL SARKKKGREE KKDRTNGCSL NCYSSSQDLK  300
DSSSNSVNDV SKSNK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6207191e-33JX620719.1 Gossypium hirsutum clone NBRI_GE67032 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016692457.10.0PREDICTED: transcription factor bHLH121-like isoform X1
TrEMBLA0A1U8JQA30.0A0A1U8JQA3_GOSHI; transcription factor bHLH121-like isoform X1
STRINGGorai.003G009400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.15e-48bHLH family protein