PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_D02G2344

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 100aa MW: 11832.3 Da PI: 8.7309

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G2344	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.6	2.9e-10	31	84	34	88
SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 34 ktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 lt+ de+ W++ + r ++++ ++ ++ W++F ++n++++gD+v +++++r+ Gh_D02G2344 31 SNLTVIDERLCPWTFDY--RVSRRGrVLSGSHWQGFIRQNHVQVGDTVSIERNDRH 84 36999**********..444444388899******************77553 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	8.586	1	98	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.6E-8	4	83	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.92E-7	30	86	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.2E-7	31	96	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
MALLQKTVEQ LDLQQLTVTE AYDTEPFPNA SNLTVIDERL CPWTFDYRVS RRGRVLSGSH 60 WQGFIRQNHV QVGDTVSIER NDRHCYRAPY KIEIIRNRRN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017632671.1	7e-42	PREDICTED: uncharacterized protein LOC108475196
TrEMBL	A0A0D2NII9	3e-48	A0A0D2NII9_GOSRA; Uncharacterized protein
STRING	Gorai.005G264300.1	6e-49	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19736	2	3