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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G2343 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 104aa MW: 12215.7 Da PI: 9.5006 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.1 | 2e-10 | 30 | 96 | 33 | 98 |
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 + l++ de+ W++ ++++++ gr++ + W++F ++n++++gD+v ++++ g+ ++ +++ ++r Gh_D02G2343 30 ARSLMVIDERRYPWTFGYRITRR-GRVLSGFHWQNFIRDNNVRVGDTVSIERNdGHdYQAPYKIEIIR 96 4569**************65444.46788899*******************76444455556666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.418 | 1 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.5E-9 | 4 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-8 | 28 | 84 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MALLQKTVEQ LDLRELTVTA AYDTEPFPNA RSLMVIDERR YPWTFGYRIT RRGRVLSGFH 60 WQNFIRDNNV RVGDTVSIER NDGHDYQAPY KIEIIRNPRN SSGT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017632671.1 | 2e-46 | PREDICTED: uncharacterized protein LOC108475196 | ||||
TrEMBL | A0A0D2NII9 | 2e-49 | A0A0D2NII9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G264300.1 | 3e-50 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19736 | 2 | 3 |