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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G2094 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 391aa MW: 44678.8 Da PI: 8.5657 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.2 | 3e-18 | 104 | 193 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffk+++ps v + +++lpk+f++ + ++ + + t++l e+g+++++++ +++k l++GWk+F k++gL +gD +vF+l++ s+f +v ++r Gh_D02G2094 104 FFKIMIPSVVCRGFWMSLPKEFCQLN-LP-NHDATVILVGETGKEYRINFLVQRKA----LSGGWKKFSKEHGLLVGDALVFHLIRPSKF--KVYIVR 193 99*********************666.44.45679***************655555....9************************98999..777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-21 | 97 | 195 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-24 | 98 | 195 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.79E-26 | 102 | 193 | No hit | No description |
PROSITE profile | PS50863 | 13.902 | 104 | 195 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.9E-16 | 104 | 193 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-21 | 104 | 195 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MMMNTNMKIK IEEEEEELFD DEGNDRLPIS QLFQLLQQRQ SISMQENIRD CRQKASRKRP 60 RDKNYNDHVV KGTKRVSEQD FAKSPVIERA EQVQANLSAE FPSFFKIMIP SVVCRGFWMS 120 LPKEFCQLNL PNHDATVILV GETGKEYRIN FLVQRKALSG GWKKFSKEHG LLVGDALVFH 180 LIRPSKFKVY IVRMNGLDEI DAALGLLRLQ SSANQTGIYA AGKNNSRPFC NDINQYEVHK 240 YGRSFLRAQE NQSENGTLDV GSSKVEGIRF TKTVSIADAI RASEISTLRS GFVPWDNALN 300 SFDFLGTDVG SLHKRVRHVL NHTFESKPEL KLKYKEAKLE RAYAEQETKS LESDLSGKKE 360 EMQRLDAEID ALTVNAKRYE LMFEAAANAP W |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480251.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1 | ||||
TrEMBL | A0A0D2SMJ6 | 0.0 | A0A0D2SMJ6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G238700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22268 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-32 | B3 family protein |