PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G2093
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 406aa    MW: 46463.3 Da    PI: 6.0419
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G2093genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.51.4e-1946134298
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   k++++s+v+   +l lp +f++ h+   ++++t++ledesg++++  +i     +r+ l++GWk F  +++L egD++vF+l+g+s+f  +v ++r
  Gh_D02G2093  46 MKTMVRSNVTHGFWLHLPMPFCKLHMP--KQDTTIILEDESGEEYKASYIA----QRTALSAGWKAFSADHKLVEGDVLVFHLVGSSKF--KVYIVR 134
                  699*******************99974..4889****************43....3456**************************9999..777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-2241134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-2341135IPR015300DNA-binding pseudobarrel domain
CDDcd100173.60E-2543134No hitNo description
PROSITE profilePS5086313.21145136IPR003340B3 DNA binding domain
SMARTSM010192.2E-2045139IPR003340B3 DNA binding domain
PfamPF023623.8E-1746134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGTKIDEPQI PEMSLDPPEI TNPQPNVMER VEEIQANLAG RFPSCMKTMV RSNVTHGFWL  60
HLPMPFCKLH MPKQDTTIIL EDESGEEYKA SYIAQRTALS AGWKAFSADH KLVEGDVLVF  120
HLVGSSKFKV YIVRAFKSSE VDRCFRSLEV DIQAKPIRSI RMKRTKRPSK KAKCLELLPL  180
DPPDDNVENK SLMVLDTNSE HLTDRYDNDN KDPSSGLDDG IKSLASVIDF KEIKSIDNFI  240
IIVNGSRIDS ELSEYHRTKY YELCCSQNSF LHDNLLESIS SKLALEIITQ IINIAEAIRA  300
CKISTSQADY TLWDKTLKGF ELLGMNVGFL RAKLNRLNTL SLELQQGVNM ERCKEQDHMK  360
EEKKSLEQKL VKLKDAMHKL DTEIETLKEN AEKYELIFRE EVTAAW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016691692.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
RefseqXP_016691693.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A1U8JSE20.0A0A1U8JSE2_GOSHI; B3 domain-containing protein Os01g0234100-like
STRINGGorai.005G238600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167171012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-38B3 family protein