PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1846
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 411aa    MW: 45741.3 Da    PI: 6.5174
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1846genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-19201251256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Gh_D02G1846 201 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 251
                  59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-33200260No hitNo description
SuperFamilySSF541719.15E-23201259IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-32201259IPR001471AP2/ERF domain
SMARTSM003802.7E-40201264IPR001471AP2/ERF domain
PROSITE profilePS5103222.932201258IPR001471AP2/ERF domain
PRINTSPR003678.0E-11202213IPR001471AP2/ERF domain
PfamPF008472.1E-12202251IPR001471AP2/ERF domain
PRINTSPR003678.0E-11224240IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MTEANNRGKS QKGVVDETEK MTTFQDGETE KGKHLDSGSE RRQWKPVFDE ASISQRPLKK  60
ICSPERHHPL PSSASLAHHS SPSSSSSSSS SSSSSSSSLP SSRLVFPFAF DASQPPIFFP  120
RQYGNTQQQQ QQHGLIYRPL YAAETSLSPQ QQQQQQQLLQ YWSDALNLSP RGRMMTTTTR  180
LGQDGGPMFR PPLQPVHTTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEDAALA  240
YDREAFKLRG ENARLNFPEL FLNKDKDTSS PTPTSTVSSP QTPHESSKQE QGPTLEINPP  300
PPAQPQGDNP DSDEMHITAA EGSSGAGEGV SGSQELVWGD MAEAWFNTIP AGWGPASPVW  360
DDLDTTNNLL FPSNLPFTNQ NQQELNDSDH QKQHVSASAS SPMKPFFWKD Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-21200258160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5323100.0EU532310.1 Gossypium barbadense clone I11-12 ISSR marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016692274.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A1U8JVI40.0A0A1U8JVI4_GOSHI; ethylene-responsive transcription factor ERF054-like
STRINGGorai.005G202900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-50ERF family protein