PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G1806 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 445aa MW: 49445.4 Da PI: 9.2355 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.8 | 3.9e-05 | 43 | 63 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H Gh_D02G1806 43 CEICGKGFQRDQNLQLHRRGH 63 *******************88 PP | |||||||
2 | zf-C2H2 | 13.6 | 0.0002 | 117 | 139 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Gh_D02G1806 117 WKCEKCSKRYAVQSDWKAHSKTC 139 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.076 | 41 | 63 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.03E-6 | 41 | 63 | No hit | No description |
PROSITE profile | PS50157 | 11.489 | 41 | 63 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.7E-5 | 41 | 63 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 43 | 63 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 120 | 82 | 112 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.6E-5 | 105 | 138 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.03E-6 | 112 | 137 | No hit | No description |
SMART | SM00355 | 130 | 117 | 137 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MLETMAEEPV SNGFMQNPVP GSNNPPVAKR KRNLPGTPGK FLCEICGKGF QRDQNLQLHR 60 RGHNLPWKLK QRTTKEVRKR VYVCPEKTCV HHHPSRALGD LTGIKKHFYR KHGEKKWKCE 120 KCSKRYAVQS DWKAHSKTCG TREYKCDCGT LFSRRDSFIT HRAFCDALAE ETARVNAASS 180 MHSLATTNFS YQLMGNPLDT GMPQHFPSIF KTISSNDETI DQTRRGFSLW MGQAPQGHDS 240 IGKSLQEIQQ FGSLNSGSMY SDPLVSTSNP PASDYQLNWV FGNKVSSGNA EDQLTSTSLP 300 LNNNAKENGT QLVSIPSLFS TQHQSQQTPS FSMSATALLQ KAAQIGATST DTSFLGSFGT 360 KCSNSQIQDG SKYSDLYVSN TQTTTLGRDM ENMANDISTL NQLQMYPAKR RYLQNEESGG 420 GQTRDFLGVG VQQAICHPSS INGWI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-36 | 113 | 179 | 3 | 69 | Zinc finger protein JACKDAW |
5b3h_F | 2e-36 | 113 | 179 | 3 | 69 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the ground tissue and stele cells of embryos and 2-days post-germination roots but not in the quiescent center (PubMed:17785527). Detected only in cells that perform asymmetric cell divisions (PubMed:17785527). In roots, present in cortex, endodermis, and pericycle layer (PubMed:25829440). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:25829440}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016692521.1 | 0.0 | PREDICTED: zinc finger protein NUTCRACKER-like | ||||
Swissprot | Q9ZWA6 | 1e-138 | IDD3_ARATH; Zinc finger protein MAGPIE | ||||
TrEMBL | A0A2P5RGR4 | 0.0 | A0A2P5RGR4_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.005G198900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3710 | 26 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.2 | 1e-140 | C2H2 family protein |
Publications ? help Back to Top | |||
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