PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G1425

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 475aa MW: 52226.4 Da PI: 5.3904

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G1425	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	123	145	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg s+++ ++ H t+ Gh_D02G1425 123 FECPICGASYRSEEEVSIHVETC 145 89*****************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd09212	2.40E-20	178	272	No hit	No description
SuperFamily	SSF143503	2.22E-17	189	252	IPR018997	PUB domain
SMART	SM00580	2.5E-19	190	257	IPR018997	PUB domain
Pfam	PF09409	4.7E-16	190	263	IPR018997	PUB domain
SuperFamily	SSF54236	1.83E-12	337	451	IPR029071	Ubiquitin-related domain
PROSITE profile	PS50033	11.039	366	450	IPR001012	UBX domain
Gene3D	G3DSA:3.10.20.90	6.1E-7	366	449	No hit	No description
Pfam	PF00789	2.5E-4	368	416	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MSEMKDKLKG FMKKVNTQFS SSSSSSSSGK FKGQGRVLGS SSSSGPVNPI LTRPSPIPNP 60 APSSSSSNSK PVLPSKPPVS DQNKPSSNSN PEPNHKMGSG FDPYDSFITS SKVSKNGFTL 120 NVFECPICGA SYRSEEEVSI HVETCVNNTN SLDRKGTDDE SGSNETALEE SRGEVEVRVS 180 SFLSGKPAEG SIEVVLKLLR NIVKEPGNDK FRKLRMSNPK IREAIGEVAG GVELLEFVGF 240 ELKEEGGEMW AVMDVPKEEQ ISVISKAIML LEPGNMEKFK KSENISPTAS PEKEETVESK 300 KIDRKIRVFF SVPESVAAKI ELPDSFYNLS SEELKREAEM RKKKIADSQL LIPKSYKEKQ 360 AKAARRKYRR TIICIQFPDG VVLQGEFAPW EPTSALYEFV SSALKEPCLE FELLDPVIVK 420 LRVIPSFPAA GEKGRTLEEE DLVPSALIRF KPVETDSVVF TGLSNELLEI SEPLG

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MSEMKDKLKG FMKKVNTQFS SSSSSSSSGK FKGQGRVLGS SSSSGPVNPI LTRPSPIPNP  60
APSSSSSNSK PVLPSKPPVS DQNKPSSNSN PEPNHKMGSG FDPYDSFITS SKVSKNGFTL  120
NVFECPICGA SYRSEEEVSI HVETCVNNTN SLDRKGTDDE SGSNETALEE SRGEVEVRVS  180
SFLSGKPAEG SIEVVLKLLR NIVKEPGNDK FRKLRMSNPK IREAIGEVAG GVELLEFVGF  240
ELKEEGGEMW AVMDVPKEEQ ISVISKAIML LEPGNMEKFK KSENISPTAS PEKEETVESK  300
KIDRKIRVFF SVPESVAAKI ELPDSFYNLS SEELKREAEM RKKKIADSQL LIPKSYKEKQ  360
AKAARRKYRR TIICIQFPDG VVLQGEFAPW EPTSALYEFV SSALKEPCLE FELLDPVIVK  420
LRVIPSFPAA GEKGRTLEEE DLVPSALIRF KPVETDSVVF TGLSNELLEI SEPLG

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016693045.1	0.0	PREDICTED: plant UBX domain-containing protein 2-like
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A1U8JS34	0.0	A0A1U8JS34_GOSHI; plant UBX domain-containing protein 2-like
STRING	Gorai.005G158800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9835	16	18

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]