PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0929
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 429aa    MW: 48265.9 Da    PI: 8.1418
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0929genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.7e-181299499
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 v+  s++++ + l++p  f ++ +g    s  + l+ +sg sW+v+l   ++ +  ++ +GW +Fv ++ L+ gDf+vF++dg+  f   vkvf++
  Gh_D02G0929 12 VF--SSTSSANSLRIPVGFNRNLEGR--VSASVLLKGPSGYSWNVRL--VQRNDDLLFDEGWADFVADHSLECGDFLVFRYDGDLVF--DVKVFDQ 99
                 44..77788888*******9888766..4557***************..777778**************************998777..9999987 PP
2B352.68.1e-17227320298
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  + ++++ +v+ s  l +p +fa eh   ++++++l+l++++g  W+v+    ++   +++l +GW +Fv++n++k+gD+++F+l +  +fe++v+++r
  Gh_D02G0929 227 VRIMKRFNVSGSYTLNIPYQFAMEHL--PNCKTELVLQNLKGACWTVNSVPtTRVHTSHTLCGGWLSFVRSNEIKAGDICIFELAH--KFEFRVHILR 320
                  56677778888899********9996..45899***************954566666799***********************866..8888999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-233102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-234102IPR015300DNA-binding pseudobarrel domain
CDDcd100175.45E-17798No hitNo description
PROSITE profilePS5086315.3127100IPR003340B3 DNA binding domain
SMARTSM010192.1E-139100IPR003340B3 DNA binding domain
PfamPF023625.5E-151199IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-23217320IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-24219321IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-18224320No hitNo description
PROSITE profilePS5086313.465226322IPR003340B3 DNA binding domain
PfamPF023623.3E-14226320IPR003340B3 DNA binding domain
SMARTSM010195.2E-14226322IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MSKLRRPHFL NVFSSTSSAN SLRIPVGFNR NLEGRVSASV LLKGPSGYSW NVRLVQRNDD  60
LLFDEGWADF VADHSLECGD FLVFRYDGDL VFDVKVFDQS SCEKEVAFHC KCSQAGSVFN  120
GILGQKRYRE EEDVSLDQDC EELLKRIRQS SSESVRDEEH CGRELILATT SCQGLTSCDE  180
NHDGTILKIT GKEDDLNLHG SGCIQMIGEF EEKKVAQSFN SCFPFFVRIM KRFNVSGSYT  240
LNIPYQFAME HLPNCKTELV LQNLKGACWT VNSVPTTRVH TSHTLCGGWL SFVRSNEIKA  300
GDICIFELAH KFEFRVHILR VGQEDLDRQS RKAVLDRSDS TLLKKLVKNT SKVHSKLKKV  360
QICDNKGSKV LDKWKYGNAA KKSASFVLCS LSRSGTGKQE AAISGLRMMV TVDEEKAARS  420
FASRFPSFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A9e-15810210104At1g16640
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.157971e-119boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098867511e-119
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694184.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X1
TrEMBLA0A1U8K0U40.0A0A1U8K0U4_GOSHI; B3 domain-containing protein Os11g0197600-like isoform X1
STRINGGorai.005G105400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16907911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-22B3 family protein